Basic Information

Insect: Calliphora vicina
Gene Symbol: -
Assembly: GCA_958450345.1
Location: OY288236.1:70729185-70735524[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 6 5.2e+02 2.4 0.5 2 23 416 438 415 438 0.91

2 10 0.027 2.3 9.8 0.1 6 23 448 465 448 465 0.99

3 10 0.0002 0.017 16.5 2.6 1 23 471 493 471 493 0.98

4 10 2.5e-05 0.0022 19.3 2.9 1 23 506 529 506 529 0.92

5 10 2.5e-05 0.0022 19.3 2.0 1 23 537 560 537 560 0.98

6 10 2.5e-05 0.0022 19.3 2.1 3 23 568 589 566 589 0.92

7 10 0.022 1.9 10.0 0.4 2 23 601 623 600 623 0.96

8 10 0.00051 0.045 15.2 3.4 1 23 630 653 630 653 0.93

9 10 2.6e-06 0.00022 22.4 0.7 1 23 659 681 659 681 0.98

10 10 0.00014 0.013 16.9 1.3 1 23 687 710 687 710 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	6	5.2e+02	2.4	0.5	2	23	416	438	415	438	0.91
2	10	0.027	2.3	9.8	0.1	6	23	448	465	448	465	0.99
3	10	0.0002	0.017	16.5	2.6	1	23	471	493	471	493	0.98
4	10	2.5e-05	0.0022	19.3	2.9	1	23	506	529	506	529	0.92
5	10	2.5e-05	0.0022	19.3	2.0	1	23	537	560	537	560	0.98
6	10	2.5e-05	0.0022	19.3	2.1	3	23	568	589	566	589	0.92
7	10	0.022	1.9	10.0	0.4	2	23	601	623	600	623	0.96
8	10	0.00051	0.045	15.2	3.4	1	23	630	653	630	653	0.93
9	10	2.6e-06	0.00022	22.4	0.7	1	23	659	681	659	681	0.98
10	10	0.00014	0.013	16.9	1.3	1	23	687	710	687	710	0.97

Sequence Information

Coding Sequence: ATGGTGGTTAAATGCCTGCTATGCTTAGAATATCCAACGATACCGGGtccaaaatttttagaaatatttggtGAGGAAGGCTTACGTCTAGATATAAGTGCgattattaacaaatatttttggttaaagACAAACAGGAACTGTGAAGATGTACAACAAATATGTATGACATGTTGGGAGGTAGTAAGAGATTTCCATATACTCTATCAGAGAGTAGAGGAAGTCCATAAACATATAGGAGTCAAGACTATAGTATTGGACGATCCGCTGCCTCAAGATGTTATGCTTAAGTCCGAAGATGATCCATCTATGGCCCAAGATCCCATTATGGGCGATAATGGCATGGGTGATAATGGCATATTCGATCCGGAAGTGAAGGTAGAGGTGCACGATTTGGATTTGTTGCCACAAATAGAAATACTAGAGACTGCTAATGTACCCGATAGAGCTGCAAGATCGAGCCGTCGTGGACGTCCTCCTGCTAGGGATCAAAGTCCAAAGGTAGCGACAAAACGTATTAAAAAAGAACAATCTCCTGCGGCAGAGTCAAATATAGATGTTTTCGCTTCAAACGAGAGTCTGGCTAAGGATGGATTAAACGATTCTGGCTCGATGGAAGACATAAACTATGCTTTATTGTCAAATTCATTGGATAAATCAGATAAAGATGATGGTACAAGTAAAAGAAGAGGTAGACCCCGGAAAACGGAAgttgaaaaaactaaaacaactaCGCCGCGCCTCAAACGCTCCAAGAAACAGCAGCTGCAGGCCTCAGAGACTGCCATTAAGAACGAAAAAGATGTGGAAGACCAACCATCATGTTCAACAGCACAACAGGCCAATGCCGGCGATGCATCGGAGccaaaaattaaaactgaaaattcTACAGACGAGCAAAACTTTGATAGCTTTGCCATTACAGCTGAAAATttcgatgatgatgatgcctATGCTCAAGACGACTACGATGATGATAACGATAACTACAATAAAGACTCTGATGATTCCTCCAACTCTGAGTCAGAGTCAGATGCTTCGAACGGCTCTGACTGGGGCGAGGCtaaaaagaagaaagaaaaGTTTGCCGTTATCATGAAAAAGGAACGCAATGTCCCCAAGAAATATAAAAAGAGAGAAAAACCTTTGGTGGAACCCAAACGCATGAGCCGCGAAGAAATCGAGGCCCGTCAAGCCCAGCAGGCCGAGTATGATAACATCATAACGAAATTCTTTGAAAAAATCCGTTGTCCCAAGTGTGAACTTTTGGTGCACACATTTGGTGAAATGCGAGCCCATTTCCGTTTGGATCACAATGATGACCATGGTTTTGTCGAATGTTGTGGTCGCCGATTTGCCACGCGCAAATTTCTGGCCGAACACATACTGGTTCATTACAATCCCGAACATTTCAAGTGCAAAACATGTGATAAGGTCTGCCGTGACTCCACGCAACTGGAGGGCCACGAACAGTCACATTTACCCAATCCACCTCCATCGAAATACAAGAAAACGTTCCAGTGTGAAAAATGctcaaaaacattttcctccAAAGCTTCGTTCGAACATCACATGGTGGCGAAACATGTGCCACGAGAAGAATTCAAATTTGAATGTCCTGAATGTAAGAAAAAATGTCCAACTGAAACAAAACTTAAAGATCACATGCGCAGTGTACACGATCCCCAGAGGACAGTCATCTGTGATAAATGTggcaaaacatttaaaagtacCTACAGTCTTAAAAAACATCACGAACTGGAGCATTCGGATGTACCGAAACCAGCGCCCATACCCCAACAATGTGAAATCTGTGGTGCCTGGCTAAGACATTTGTCGGGCCTAAAACAACATATGAAAAACATACACGAGGGTGTGCAGACCGAACATCGTTGTCAGATTTGCAATAAAGTCTCATCGACAGCCAGAGCTCTCAAGAGACACATTTATCACAATCATGAGTGTATAAGAAAATTCCAGTGCACCATGTGTGATAAGGCATTTAAAAGGGCCCAGGACTTAAGGGAGCATACATCTGTGCATACAGGCGAGGTGTTGTATACATGTCCTAATTGTCCCATGACTTTCTTTTCGAATGCCAATATGTATAAACACCGGCAACGTTTACATCGAGCCGAATGGGAGGCTGATCGTAGTAAACCTATACCACCAAATATTATGAAACAAGCTAAACAGGGCAGTAAGtttgttaaaacaaaacgtACTCCCGGTGAAATTACACCCTCTCATTTGGTAACACCAATGCCCATCCTACCACCATCTGCGGTATTAAATCCtcaaattttatatgcaaacATGACTTTGCATTGA
Protein Sequence: MVVKCLLCLEYPTIPGPKFLEIFGEEGLRLDISAIINKYFWLKTNRNCEDVQQICMTCWEVVRDFHILYQRVEEVHKHIGVKTIVLDDPLPQDVMLKSEDDPSMAQDPIMGDNGMGDNGIFDPEVKVEVHDLDLLPQIEILETANVPDRAARSSRRGRPPARDQSPKVATKRIKKEQSPAAESNIDVFASNESLAKDGLNDSGSMEDINYALLSNSLDKSDKDDGTSKRRGRPRKTEVEKTKTTTPRLKRSKKQQLQASETAIKNEKDVEDQPSCSTAQQANAGDASEPKIKTENSTDEQNFDSFAITAENFDDDDAYAQDDYDDDNDNYNKDSDDSSNSESESDASNGSDWGEAKKKKEKFAVIMKKERNVPKKYKKREKPLVEPKRMSREEIEARQAQQAEYDNIITKFFEKIRCPKCELLVHTFGEMRAHFRLDHNDDHGFVECCGRRFATRKFLAEHILVHYNPEHFKCKTCDKVCRDSTQLEGHEQSHLPNPPPSKYKKTFQCEKCSKTFSSKASFEHHMVAKHVPREEFKFECPECKKKCPTETKLKDHMRSVHDPQRTVICDKCGKTFKSTYSLKKHHELEHSDVPKPAPIPQQCEICGAWLRHLSGLKQHMKNIHEGVQTEHRCQICNKVSSTARALKRHIYHNHECIRKFQCTMCDKAFKRAQDLREHTSVHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRSKPIPPNIMKQAKQGSKFVKTKRTPGEITPSHLVTPMPILPPSAVLNPQILYANMTLH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00742164;
90% Identity: iTF_00260016;
80% Identity: -