Cvic022271.1
Basic Information
- Insect
- Calliphora vicina
- Gene Symbol
- -
- Assembly
- GCA_958450345.1
- Location
- OY288235.1:40908282-40910077[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.024 2.1 9.9 0.8 2 23 267 289 266 289 0.94 2 10 0.21 18 7.0 0.2 6 23 298 315 298 315 0.98 3 10 3.7e-05 0.0032 18.8 1.6 1 23 321 344 321 344 0.95 4 10 0.011 0.94 11.0 1.8 2 23 351 372 350 372 0.96 5 10 2.2e-05 0.002 19.5 0.1 1 23 379 402 379 402 0.98 6 10 0.022 1.9 10.0 0.4 2 23 407 428 407 428 0.96 7 10 0.016 1.4 10.5 0.1 1 20 436 455 436 459 0.90 8 10 0.00061 0.053 14.9 0.0 1 23 466 489 466 489 0.96 9 10 7.6e-08 6.7e-06 27.2 2.1 1 23 495 517 495 517 0.98 10 10 0.0002 0.017 16.5 5.9 1 23 523 546 523 546 0.98
Sequence Information
- Coding Sequence
- ATGTCCATAAAGTTATGCTGTAGCTTGTGTTGCTCTCCAAGCAGTGAATATAAAACATTACACAATGAAGTGGGAGACAGCACTGAAGTATATGAAATTacagtaaaatattttgatcCCATGTTAATAACTGATGAAGAGATCTGTAAATTCCCACAAGAAAATAAAGTGCTTTGCCAAGACTGTTGGGTGCCCATCAAAGAGTTCCATGAATTTCAGCTGAATGTCATAAAAACCCGTTCACTACTGGAGAAATCTGAAATAAAACAGCTGCCATTGATAATTAAAACGGAAAATGAAATCGAACTGGCAGATCTGAATGTAAATTCTGAGGTTGatagatattttgataaaagcgatgatgatgatgataatgataacTTTAGGTTTGAAAGTATTGATATTAAAACTGATTTGGAGGAGGAGGAATCAATAACCACACACGATGAAGACGAAGATGAAAAGCCTTTAATAAACTGGAAAAGAACAAATGTAGctaataagaaaattaaaatttccccaaaaccaaaaaattgtGAAAGTAATGCAAAAACAGAGCCAGATGCCACAAAACCAAAAGCCCGAAGAGGTAGAAAGCCCAAAAATATGCCGGCGGCAAGCTTTAATAATGACAAAAATGATAATAGTCATGAAAATTCCGACTTGGATGAAAATGGtctaaaaataaagaaagtaaAACTAAATGAGGACGATGAAAAAGAAAAGAgtaattctaaatttaatttagaaaaagctCGAGAATCGGATGCATTCATTAGAGAATGGAAACCTGTATTGGAATGTGATTTATGCGAAGAAACAACATCCAGCTTTGATAAATTGCGATCTCATTTTAGGGAAAAACACAAAACCAGATTTTATATAAAGTGTTGTGAGAGAAAGTTCTATCGACGTTATGTATTAGTTAATCACATACAACTGCATCTCGATCCCGAGACTCACAAATGCGAAATTTGCGGAAAAGTAAGTGCAAACAAAAACAATCTTAAGctgcataaaaaattaatgcatGAAGAAATCGAACAACTGGAATGTGAAGTTTGTCATAAGCTATTTAATCTGAAAACCTCTTTAGATCGTCACTCACTAACCCATGTAACCGGTGATAAAGACTTTGTTTGCCAAGAATGTGGCAAGGGGTATGTGCTTGAAGTCCAACTTAAGTCCCATATCAGAACTGTACATAATGTTGACCGTGTCTGCGATCAGTGTGGAAAAACTGTTCATGGAATTCAGGCTCTTAAAAAGCATTTAATGGAACATGCTGGTATAGCTAAACCTAAATTTCCCTGTGACGAATGCGGTGTTGAATTAAATTCTCGCAATGGTCTAAAACGTCATAAGGGGGCATTTCATCATGACGGTTCAACGATTTATGTTTGTGGGATTTGTGGTAAAGTTGCAGCCAGCGAAAGCGCTTTactaaatcataaaaaatacgtCCACGAAGAAGAAAGAAAACATAAGTGCACTTATTGTGATAAAGCATTTAAACGACCAAAAAATTTACAAGAACACATTGCCACTCACACGGGTCAAGATCTGTATCAATGTCCACATTGTCCGCAAACTTTTAAAGTTAGTGCGAATATGCATCATCATCGCAAGAAAGTACATCCGGTTGAATGGGAAGAGGGTAGAAAGAATCGTTTACAAGTACCTAAAGTTGATATCAATAGTGTTAAAAATCAAGTTGTGCTTTGA
- Protein Sequence
- MSIKLCCSLCCSPSSEYKTLHNEVGDSTEVYEITVKYFDPMLITDEEICKFPQENKVLCQDCWVPIKEFHEFQLNVIKTRSLLEKSEIKQLPLIIKTENEIELADLNVNSEVDRYFDKSDDDDDNDNFRFESIDIKTDLEEEESITTHDEDEDEKPLINWKRTNVANKKIKISPKPKNCESNAKTEPDATKPKARRGRKPKNMPAASFNNDKNDNSHENSDLDENGLKIKKVKLNEDDEKEKSNSKFNLEKARESDAFIREWKPVLECDLCEETTSSFDKLRSHFREKHKTRFYIKCCERKFYRRYVLVNHIQLHLDPETHKCEICGKVSANKNNLKLHKKLMHEEIEQLECEVCHKLFNLKTSLDRHSLTHVTGDKDFVCQECGKGYVLEVQLKSHIRTVHNVDRVCDQCGKTVHGIQALKKHLMEHAGIAKPKFPCDECGVELNSRNGLKRHKGAFHHDGSTIYVCGICGKVAASESALLNHKKYVHEEERKHKCTYCDKAFKRPKNLQEHIATHTGQDLYQCPHCPQTFKVSANMHHHRKKVHPVEWEEGRKNRLQVPKVDINSVKNQVVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00045545; iTF_00200120; iTF_00259998;
- 90% Identity
- iTF_00045545; iTF_00259998;
- 80% Identity
- -