Cvic026252.1
Basic Information
- Insect
- Calliphora vicina
- Gene Symbol
- -
- Assembly
- GCA_958450345.1
- Location
- OY288235.1:117405026-117407020[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00063 0.055 14.9 1.4 2 20 217 235 216 238 0.92 2 12 0.00021 0.018 16.4 1.1 1 23 244 267 244 267 0.92 3 12 0.00082 0.072 14.5 0.0 1 23 279 301 279 301 0.97 4 12 0.19 17 7.1 1.5 1 21 306 326 306 329 0.95 5 12 1.6e-05 0.0014 19.9 0.4 1 23 335 357 335 357 0.98 6 12 2.4e-05 0.0021 19.4 1.0 1 23 363 385 363 385 0.98 7 12 5.1e-06 0.00045 21.5 1.3 1 23 391 413 391 413 0.95 8 12 3.3e-05 0.0029 18.9 1.9 1 23 418 440 418 440 0.97 9 12 2.7e-05 0.0023 19.2 1.3 1 23 446 468 446 468 0.96 10 12 2.2e-05 0.0019 19.5 4.9 1 23 474 496 474 496 0.98 11 12 0.00018 0.016 16.6 0.5 1 23 502 524 502 524 0.97 12 12 0.00094 0.082 14.4 0.3 1 23 530 552 530 552 0.96
Sequence Information
- Coding Sequence
- ATGACTTCAATTCTGTTGGGTCGTATATGTCGTACCTGTTTAAAAAAGTCTAAAGATATGCATAAATTACGTGAGTTCATCAATGATGATCTACAGATTGAGGAGATGCTAAATCAATCCATACCCAATTTTGATCTGGGTATGGATGAAGTACCTTTGCCGGTGGAGATATGCGAAGAGTGTCTTTATAAGTTACAAAAATCCTATGATTTCGTACAAGTTTGTTTAACAAGCAACAAGGAGTTGAAGAATATTTTGAATCAACAGGAGCAAGAAATCGAAGGGGCACTGATAGCTTGCACAACAGATGCAAATCCAATGGATATTTTAGAGCAAACCGACATACTAatggataattttaaaaaagaaccaCATGACGAGAACTCTAACGCCAGTCGGGGACAAGTTAATGGTGGCGTCCAAGCCATGAGCCCAGATCATCAATTTGACGCGGTTAAACTTGAAGTAGAAATGCTAAATGATAGTTTCCATGAAGACGGTAGTAGCTCTGAAGAATATTGGCCACATGATGATAAAGAAGATAGTGAGAGcaatttctttcaaaatatggccaaaaaagcTTCTCTAGATGTTAAGCCCAAACGACAATACCGCAGAAAAGTACCTTTAAAACGTGTTAGCAATAAAGTTTGTCTACACTGCAATAAGGTGTTTGCCAAAAAGAATCTTTTAACCAAACATTTGCCTGTACATGACCCGGACAATGAATTTGTCTGTGACATTTGTAATTATCGTTTTTCGAgtgaaagaaaactaaaaactcACGTAAGTGGTAAACATACGGGTGTAGAAATAAGTTTAGCTGGTGGTCCATATCCCTGTCCTGATTGTCCCATGATATTTCAACAAACACGTTCTTTGGCTGCCCATCGTGTCATGCATTCAGAAAGAGATTTTAAATGTGAGGTTTGTAGTATGAATCTTAAAACAATGGCTGCCGTTACCAGACACATGAATTGTAAACATCCCGATGTGTTGCCCTATAAATGTAATATATGCGAGAAGGCTTTTCCAGTGGAAAATCATTTGAACGATCATATCAATGAGCATATGGGCTATAAGAAACATAAATGTGATTTATGTGAAAAAAgttttccCAATACTACTGCCCTAAAGGATCATGTACGCATACATACTGGGGAATCACCGTTTTTGTGCCCACATTGTGGCAAAGCCTTTAAAACGGCCAATGTTTTGCGCCAACATTTACAAAGACATGGCGAGAAAAAATTCCATTGTCCCGAGTGTCCCATGAAATTTTTCGTCAAAGTCAATCTGACCAAACATATGAGCTCACACACTAAGCTAAAGCCACATGTTTGCGATATATGTGGTTCAGCATTTACCAGACAGGATTCATTAAAGGCTCATAAGTTTAAGCATTCCGGGGAGAGGCCTTTCAAATGCGAGGATTGCAATATGAGctttGTATTTAAACGCCACTTGAAAAGACATAAAATCACCCATACCGGCGAAAAGCCTCACATGTGCAGCTTTTGTGATCGTGCTTATGCCGCCAGTGGAGATTTGGTTAAACATTTGCGCACTCATGTGGGCGAAAAAACCTATTTTTGTGACCAGTGTCCGGAAGCATTTAAATATTCGATTGATCTTAAAGACCATAAAGTGATGCATTACAAGGAAAAATTAAGTTTACAACAACCAGTTGATATTCCACACGAAAACCCGGTAAATGTAACAAATGTAACCAATGAAACTATTTTGATAGAAACAGAAACTGCAGTAGTTACTTTAGAAGAACTATATGAAGTTGATAAAAATCTTGATGAATAA
- Protein Sequence
- MTSILLGRICRTCLKKSKDMHKLREFINDDLQIEEMLNQSIPNFDLGMDEVPLPVEICEECLYKLQKSYDFVQVCLTSNKELKNILNQQEQEIEGALIACTTDANPMDILEQTDILMDNFKKEPHDENSNASRGQVNGGVQAMSPDHQFDAVKLEVEMLNDSFHEDGSSSEEYWPHDDKEDSESNFFQNMAKKASLDVKPKRQYRRKVPLKRVSNKVCLHCNKVFAKKNLLTKHLPVHDPDNEFVCDICNYRFSSERKLKTHVSGKHTGVEISLAGGPYPCPDCPMIFQQTRSLAAHRVMHSERDFKCEVCSMNLKTMAAVTRHMNCKHPDVLPYKCNICEKAFPVENHLNDHINEHMGYKKHKCDLCEKSFPNTTALKDHVRIHTGESPFLCPHCGKAFKTANVLRQHLQRHGEKKFHCPECPMKFFVKVNLTKHMSSHTKLKPHVCDICGSAFTRQDSLKAHKFKHSGERPFKCEDCNMSFVFKRHLKRHKITHTGEKPHMCSFCDRAYAASGDLVKHLRTHVGEKTYFCDQCPEAFKYSIDLKDHKVMHYKEKLSLQQPVDIPHENPVNVTNVTNETILIETETAVVTLEELYEVDKNLDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00045489;
- 90% Identity
- iTF_00200062;
- 80% Identity
- -