Cvic021081.1
Basic Information
- Insect
- Calliphora vicina
- Gene Symbol
- -
- Assembly
- GCA_958450345.1
- Location
- OY288235.1:5306521-5309905[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00012 0.011 17.1 0.7 2 23 38 59 37 59 0.97 2 23 0.014 1.2 10.7 0.8 1 23 136 159 136 159 0.96 3 23 0.29 25 6.5 0.8 2 23 167 188 166 188 0.96 4 23 5 4.4e+02 2.6 0.3 2 19 197 214 196 216 0.91 5 23 0.0018 0.16 13.4 0.9 2 23 233 254 232 254 0.96 6 23 0.048 4.2 9.0 0.4 2 20 267 285 266 288 0.93 7 23 0.018 1.6 10.3 0.2 3 23 369 390 367 390 0.95 8 23 0.0011 0.098 14.1 0.9 1 22 397 418 397 418 0.96 9 23 0.044 3.8 9.1 4.2 1 23 449 471 449 471 0.95 10 23 0.039 3.4 9.3 0.2 2 19 498 515 497 517 0.94 11 23 0.00072 0.063 14.7 7.9 1 23 575 598 575 598 0.98 12 23 0.025 2.2 9.9 1.4 1 23 635 658 635 658 0.97 13 23 0.0011 0.095 14.2 0.9 2 23 714 735 714 735 0.98 14 23 0.0065 0.57 11.7 1.5 1 23 741 763 741 763 0.97 15 23 0.0025 0.22 13.0 2.4 1 23 769 792 769 792 0.97 16 23 0.00027 0.023 16.1 1.0 2 23 810 831 809 831 0.98 17 23 0.03 2.6 9.6 3.0 1 14 837 850 837 859 0.82 18 23 0.026 2.3 9.8 0.4 1 23 865 888 865 888 0.96 19 23 0.00074 0.065 14.7 0.3 2 23 944 965 943 965 0.98 20 23 1.3e-05 0.0011 20.2 1.9 1 23 971 993 971 993 0.99 21 23 0.00023 0.02 16.3 0.7 1 23 999 1021 999 1021 0.98 22 23 0.0037 0.32 12.5 4.7 1 23 1027 1049 1027 1049 0.99 23 23 1.8 1.5e+02 4.1 3.1 2 22 1056 1076 1055 1079 0.77
Sequence Information
- Coding Sequence
- ATGCACCTTACATATATGCATCCGTTCGAATCATTAGATTCGAACACTAAGTTTATAGAGCGATTATTTGGAGATCGTTTATACAGCAAGCCTACAGCTTGGTGTCTGGTGGAATGTAAATTGTGTGATACagcatttacaacaactaaaGAACTTCGTCAGCACTTAGAAAAACACAGTGAAGTAAACACTCTTCATAGCTTAGACTTGGACAGTGACATTGTCCAGCATTTATTTCCAAATACAAACGATTTAAACATTGTCAAGAAATGTATATGCAATGATATTCGTGGAAAACGTTGGTTCAAATATTACACAGTGTTAaatgaacatttttatgaaatgtcTGTTAGCGATACGGAACCCGAAGATTTGGTAGAAGAAAATTCAGAGCGTACTGGAAAATACACGTGTCAATTGTGTGCTCAAGGTTTTTCGTATAAATATCAAGTATTCTCACATTTAAAGGAAGCTCATAACAAGAAAGAAATTCCTTTGAATTGTAGCCAATGCAAATtggaatttatttcaataaaaatgtacGAACTACATAAACAAACCCACTGCCGAAATAAACATAAAGTTTTAGTTTGTCCACAATGTCCCGGTAAGTTTGTTTGGccggaaaatatgaaaaaacacaaTTGTGCCAGGAAAGTACCAGTAACTTTAGCGGCAGTTACTAAGGATCAACTAAAATGTAATACATGTGATCGTAAATTTGAGGAGAAAACAGAATATCAAGAGCATTTAGGGACACACAGTAAAGACAGGACCATGTCTGCAAAAACTATAATACGATGTGGTCTTTGCACAAATTCTTTTGAAACACTTCAACAATTACGTAAACACCTGCCGTTGCATGCCGATGGTGTAACTGGTATAGACTTTAAAGgatgtatttatgtaaaaagCTTTGAACGTACCAAAACAATTGATTTGGTGTCACTGCAGTTGAGCATTCAAAATGCTTATAATAGATctgaaataagttgtttttacCAAGCCATCGATAAGTACGGCAATGAACTAGACCTTTCAGACTCAGATAGTAACACAGAAGAGGATGCAGATAATGGTCAAAATGTAAGAAGACAATACGGGTGTGCTATTTGCAAAGAAATATTTGCAAAACGAAAACTTCTATTAAACCATCAACAAGAACAGCACAACAATGTGCCACTGCCCTTTAAGTGTAAGGACTGTAAACAGCAATATGTTAGTCTTGATTTGTTACAACAACATTTAAAAAGAGTTTGTGGAAATGAACATCATCGAATAGCTGCTCAACACAAGGAATTACAGCATCCCATGATCTCCCAACCTGCCGCCAGTGATCATCTTCATTATTGTCTGCTGTGCCCGAAAAGATTCATCAGTGCTGAACACGTCAAAGATCACTTAAGTCACCATCGTTTGACACGCGCTGATGTCAAGACCGTTGAAAGTATAGTAAATTCTACGTGGTGGCCAAATGGtgacaaaataattaaatgtaaaCTATGTGgtctaatatttaaaaatatgaccaGTTTAAGTGAGCATTTTTCACCTACAAATCCTCAAAATTTGTGTGCCAATTCGCATTCACTGGCAAATTATTCAATTACAAATCAAAAAGGATTCGAATTGCATTTAGAACTGGATTCTGAAACAGAAGatgaagaaaaagaaaaagaaaaagcgATACATAATGAAGAGGAtaagaaacatttattttcctATAAGTGTTGCATGTGCAGCAAATCGTTTAAACGAAAATATCAAATAGCTCATCATCAGCGTTCTATGCACAACTATGAACAGTTAAAGCTAAAATGTGAACGTTGTATTTTTAGTACAGTCTCACAgaaAGTTTTAGATTATCATAAAGCCACGCAGTGTTTTAATGTTGAAAAACAATATGAATGTAACCAGtgccattttaaatttatgtggcAAGAGAATCTTGATAATCACATTAACATGATTCATATTTCAAAAGAATTGGCTAAAACGAAGAATGTTAAGATTTCTAAAGAGTCTGTACCAACCAACAACACAAGCGACACCAATATTATCGAATGCAATGACTCGGAAAAATTTCACAAGATTTCTAGATCAAATGTTTCTGAAGAAACCAGACCAAAAGGGAAAAGGAAATGTCCCATTTGTGGGATCCACTTGTCGATCCAAACAAGTCTTACGTATCACCTGAGAACTCACACGGGTGAGAAGCCCTTCAAGTGTGAGTTTTGCGACAATGCCTTTACACGTAAAAGCGTTTTAGATTATCACCGACTCCAACACACTGGCGAACGTCCCCACAAATGTACGCAATGCGGAAaaggatttttgaaaaaaattaaattaaataatcacATCAAAATgattcatacttcaaaagaaTTGGCTAAAGCCAACGAACCCAGTCCAAAAGCGAAAAAGAAATGTCCCATTTGTGGGATCCACTTGTCGATCCAATCAAGTCTTACGTATCACCTGAGAACTCACACGGGTGAGAAGCCCTTCAAGTGTGAGCTTTGCGACAAGGCCTTTACACGTAAAAGCATTTTAGATTGTCACCGAAGCAAACACTCTGGCGAACGTCCCTACAAATGTACGCTATGCGAAAAgggatttttgcaaaaaatcaaatTAGATAATCACATCAACTTGattcatacttcaaaaaaattagccaaaccGACGGATGTTGTGATTTCTAATGAGTCTGTATCAATCAACAATACAAGCTATACCAATATTATCGAATGCAGGGACTCGGAAAAATTTCACAAGATTTCTAGATCAAATGTTTCTGAAGAAACCAGACCAAAAGAGAAAAAGAAATGTCCCATTTGTGGAGTCTACTTGTCGATCCAAACAAGTCTTACGTATCATATGAGAACTCACACAGGTGAGAAACCATTTAAGTGTGAATTTTGCGAAAAGGCCTATTCACGTAATAGCGCTTTAGAATATCATCGACGCAAACACACTGGCGAACGTCCTCACAAATGTACGCAATGCGGAAAAGGATTTATGGAAAAAGGGAGATTAGCTGATCACATCCGCATACACACTGGCGAATATCCCTATCAGTGCAGGTTTTGCCAGAAAAGATTCAGGAAAGTGAACTATATGAGACTACATTTGCGTACTCACACAGGCGAGAATCTTTGTAAGTGTGACATTTGTGGTAAGGAATTTTTATGTATCGCCTATCTGAAAAAACATCTTAAGTCAAAAGCGCATCACGTTGAAAAGGATTTATAG
- Protein Sequence
- MHLTYMHPFESLDSNTKFIERLFGDRLYSKPTAWCLVECKLCDTAFTTTKELRQHLEKHSEVNTLHSLDLDSDIVQHLFPNTNDLNIVKKCICNDIRGKRWFKYYTVLNEHFYEMSVSDTEPEDLVEENSERTGKYTCQLCAQGFSYKYQVFSHLKEAHNKKEIPLNCSQCKLEFISIKMYELHKQTHCRNKHKVLVCPQCPGKFVWPENMKKHNCARKVPVTLAAVTKDQLKCNTCDRKFEEKTEYQEHLGTHSKDRTMSAKTIIRCGLCTNSFETLQQLRKHLPLHADGVTGIDFKGCIYVKSFERTKTIDLVSLQLSIQNAYNRSEISCFYQAIDKYGNELDLSDSDSNTEEDADNGQNVRRQYGCAICKEIFAKRKLLLNHQQEQHNNVPLPFKCKDCKQQYVSLDLLQQHLKRVCGNEHHRIAAQHKELQHPMISQPAASDHLHYCLLCPKRFISAEHVKDHLSHHRLTRADVKTVESIVNSTWWPNGDKIIKCKLCGLIFKNMTSLSEHFSPTNPQNLCANSHSLANYSITNQKGFELHLELDSETEDEEKEKEKAIHNEEDKKHLFSYKCCMCSKSFKRKYQIAHHQRSMHNYEQLKLKCERCIFSTVSQKVLDYHKATQCFNVEKQYECNQCHFKFMWQENLDNHINMIHISKELAKTKNVKISKESVPTNNTSDTNIIECNDSEKFHKISRSNVSEETRPKGKRKCPICGIHLSIQTSLTYHLRTHTGEKPFKCEFCDNAFTRKSVLDYHRLQHTGERPHKCTQCGKGFLKKIKLNNHIKMIHTSKELAKANEPSPKAKKKCPICGIHLSIQSSLTYHLRTHTGEKPFKCELCDKAFTRKSILDCHRSKHSGERPYKCTLCEKGFLQKIKLDNHINLIHTSKKLAKPTDVVISNESVSINNTSYTNIIECRDSEKFHKISRSNVSEETRPKEKKKCPICGVYLSIQTSLTYHMRTHTGEKPFKCEFCEKAYSRNSALEYHRRKHTGERPHKCTQCGKGFMEKGRLADHIRIHTGEYPYQCRFCQKRFRKVNYMRLHLRTHTGENLCKCDICGKEFLCIAYLKKHLKSKAHHVEKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -