Cvic021083.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calliphora vicina
Gene Symbol
-
Assembly
GCA_958450345.1
Location
OY288235.1:5332659-5343857[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.023 2 10.0 3.5 1 23 329 352 329 352 0.96
2 25 0.034 3 9.4 3.0 1 23 396 419 396 419 0.96
3 25 0.55 48 5.7 4.1 1 23 426 449 426 449 0.97
4 25 0.00037 0.033 15.6 1.5 2 23 480 501 479 501 0.97
5 25 3.8 3.4e+02 3.0 3.7 1 23 578 601 578 601 0.96
6 25 2 1.7e+02 3.9 0.6 3 20 640 657 639 659 0.94
7 25 0.014 1.2 10.7 0.1 2 23 676 697 675 697 0.96
8 25 0.92 80 4.9 0.7 2 20 710 728 709 731 0.93
9 25 0.0058 0.5 11.9 0.5 3 23 812 833 810 833 0.95
10 25 0.00074 0.065 14.7 0.3 1 22 840 861 840 861 0.95
11 25 0.41 36 6.0 0.3 2 21 873 892 872 896 0.89
12 25 0.09 7.8 8.1 0.9 1 23 904 926 904 926 0.95
13 25 0.049 4.3 8.9 0.1 2 20 953 971 952 972 0.93
14 25 0.0028 0.24 12.9 4.5 1 23 1029 1052 1029 1052 0.98
15 25 5.1 4.5e+02 2.6 3.3 1 23 1089 1112 1089 1112 0.93
16 25 0.00058 0.05 15.0 1.2 2 23 1159 1180 1159 1180 0.98
17 25 2.1e-05 0.0018 19.5 1.8 1 23 1186 1208 1186 1208 0.98
18 25 0.00018 0.016 16.6 6.8 1 23 1214 1236 1214 1236 0.99
19 25 8.3e-06 0.00073 20.8 3.7 1 23 1242 1264 1242 1264 0.99
20 25 0.0077 0.67 11.5 3.5 1 20 1270 1289 1270 1294 0.91
21 25 0.14 12 7.5 0.5 3 23 1323 1343 1322 1343 0.99
22 25 3.1e-05 0.0027 19.0 2.5 1 23 1349 1371 1349 1371 0.99
23 25 3e-07 2.6e-05 25.4 1.9 1 23 1377 1399 1377 1399 0.99
24 25 6.6e-06 0.00058 21.1 3.8 1 23 1405 1427 1405 1427 0.99
25 25 0.00031 0.027 15.9 0.0 2 21 1434 1453 1433 1457 0.91

Sequence Information

Coding Sequence
atgagcaattatattaataatgagtgttttataaatgaaattcaatataaatgcCGTACATGCTTTGATCCAGGACAATCAGTTTTCTCCCTTACAGCTGAATGCAGCAACTCAAAAACCTGGCGTGATTTATTAGAGGAAATTGCTCAGTTTCAACCAATCGAGGATGAGCTACTACTACCAAGGACTGTATGCTGTAAATGTTTGGATAAAATTATAAGTTTCTATGATTTTATACTGCAGATACAtaatgtgaataaaaaatacTCTCAATTATTGGGAAAATGTGAGGATGggatttcaaatgaaattgacaATTTTACTGATTGTCTGGCAGAGTCTGCTAATGATTTGCCGTTGGAGATGTTAATGACGGAAATTAAATTGGAAGAAACGCAGATTGTTCCATACGACATTGTTTACAGTGACAATAATAAACTACAAAAATTGGAATATACAGACGACATTCCAATTGCGTTATTGCAACAGGCCAAGAAACGTAAATGTATTAAGTCGTCAGTAAAACGGGTAAAGCAGGATCTGGAAGAAACGGCGACGCCTATTGTTACAGTATGTCAACTGGAAATTTTGCTTACACCTCTTGAATTGTTTAAGAAATTGTTTGATGATGACTTACTGCAACTTATTGCTCAATACTCTAATGACTATGCGTCCAAACAAAAGGCAACTGCAAATGTAACTCCAGACGAAATCAGGTGCTTTATTGCAATGTGGCTACAATACTGTCAAAAAGAACCAATAATGAAACTTATAAAGTTACATTATTTGGTTCCAGCCATACCAGGatcactaaatgaacaaaataatcaaaGTTCAAACGATAACGAAAATAAATTCAGatCCTCATCGTCCGATGAAAGTGATTACTTGCCTGAAAACGATATTTCAAAAAGCCAACCGAGCGAAAAAACTACATTTGAAATAGATTCAGACTATGCTCTAATCAAGAAAGTGAACAATTATTATCAATGTGTCGTATGTAAAACATCATTTAAGTTGCAAAAAAATTGTCGTCGTCATATAAAAGAAGCACACTCTAGCCAAAATGAAGATAGcTCCTCGTCATCTGATGAAAGCGATTATGATTATGAGTCAGCCTATAGACATAAAATCCCACTAAAAAAAGGTTCAGAACGTGATAAAATCGAAAAAGTCAACAATAATTTCGTATGTCTTATatgtaaacaaacatttacGTTGCAAAAGAATTGTCGTCGGCATATTATTATAAAGCACCCACAAAAAACCGTATTATATCCTTGCGGATTATGTGATCTACATTTTAATTGTAAGAACTACTTGCAACTACATCTTAAACGTATGCATCCAGGCGAATCACTCGGTTCAAACTATAAGCATATACAACGATTATTTGGAGATCGTATATACAGCAAGCCTGCAGCTTGGTGTCTGGTCGAATGTAAATTGTGTGATACACAATTTACAACAACTAAAGAACTTCGTCAGCACTTGAAAAATCACAGGAATGTAAACTCTCTTCATGGCTTAGACTTGGACAGTAACATTGTCCAACATTTATTTCCAGAAATGCTTGATTTGGACGTTCTCAAGGAAAGTATATGCAATGATATTCGAGAGGAAGATTGGTTCAAATATTACACAgtgttaaatgaaaatttttatgaaatgtcTGTTAGTGATACAGAAGCAGAAGATTTGCTAGAAGACACTGCAGAGGGTGTTGGCAAATACAAGTGTGAATTGTGTTTTGAAGATTTCTTGCATAAATACCAAGTTTTCTCCCATTTAAAAGAATTTCATAGTAAAGAAGAAATCCCTCTGAAATGTAGACGATGCAAATtggaatttatttcaataaaaatgcaCGAAGATCACAGAAAAACTCATTgccgaaataaaaataaagttttacttTGTACACGTTGCCCGGCCAAGTTTGTTTGGccggaaaatttgaaaaaacacaaGTGTGCCACAAAAATACCACCGGAAAACTGGCCCTCTACTACAAAAGATCAACTAAAATGTAACATATGCGAACTGGAATTTGAGGAAAAGGCAGAATATCAAGTGCATTTAGCGTCACATAGTGTTTCCAGGACAGCATCTGCAAAAGCGATAATACGTTGTGGTCTTtgtgcacaatattttcaaaaacttgaaCATTTGCGTCAACACATGCCGTTGCATGCTGATGGCGTAACTGGTATTGACTTTAAAGActgtatttatgtaaaatgctTTGAACGTAGCAAATCAATTGATTTAGTGCCAATGCAGCTGAGGATTCAAAATGCCTATATTAAATCTCAAATAAGTTGTTTTTACCAAGCCATCGATAAGTACGGCAATGAACTAGACCTCTCAGACTCAGATAGTAACACAGAAGAGAATGCAGATGATGGTCAAACTATAAAAAGACAATACGGGTGCGACATTTGCAAACAAATGTTTGCAAAACGGAAACTTCTATTGAACCATCAACAAGAACAGCACAATAATGTGCCACTGCCCTTTACGTGTAAGGACTGTAATCAGCCATATGTTAGCCTTGATTTGTTACAACAGCATTTGAAAAGGGTTTGCTGGAATGAACACCGACGAATAGCTCAGCAATGTGATTACTGTAAGGCTCGTTTTATATGGCCAAATAATCTATTGAAACACAAAGAAATACAGAATCACACGACAACTGATGTTCAACTTCATTACTGTCTCCTGTGCCCAAAAACTTTCTTTAGTGTTGAAGATGTCAAGGAGCACTTAGGTCGACATTGTGTAACACCAGCTGATGTCAAGACCGTTGAAAGTATAGTAAATTCTACATGGTGGCCAAACGGTGACAAAATCATTAAATGTAAACTATGTGGCCTAACATTTGAAACTATGGCAAAATTAAGTGAACATTATTCACCTACAAATCCACATACATCTTGCGCTAATTCGCATTCACTGGCTAATTACTCGATTACAAATCAAAAAGGATTCGAATTGCATTTAGAACTGGATTCTGAAACAGAAGTAGAAGATGAGCAAGAAGCTCATGAACATACAGGAGACGATATAAAGACTTTATATCCCTACAGCTGTTGCATGTGCAGTAAGTCGTTTATGCGAAAATATCAAATAGCTCAACATCAGCGATCTATGCATAATTATGAATTACTACAGCTAAAGTGTGAACGTTGTATTTTTAGAACAGTCTCACGGgaatttttagaTTATCATAAAGATACGCAGTGTTTTAATGATGAAAAGATTTACGATTGTGATCAGtgccattttaaatttatgtggaAAGAGAATCTTGATAATCATCATGCTATATTTCATACTCCCAAAGAGTGGGGAAAAACATCGTATGTAGCGATTTATAATCAGACTGCGCCAATCGAGAGCAATAATATGGAGTCATCATCAAACAAAGATGAGGCAAAAGTTAGCAAACCACCCAGAATAAGAAAAGTAGAGACATGTACAATTTGTGGGGTGCACTACCAAAACAGTACAGCGCTTAAGGTACACATGATGAAGCACAGGGGTGAGAAACCGTTCAAATGTGATATTTGCAAAATGGACTTTAGACGCAAATACGATTTAAAGGATCACCAAGTCACACACACTGGCGAACGTCCCTTCAAGTGTTTACATTGCGATAAAGGATTTTCGCGACAATGCAAATTACAAGAACACACGCGTATGCACACTGGCGAACGTCCATACCAGTGCACAATTTGCCAGAAATCATTTAACAAATCGTACTATCTAAAACTCCATTTGCGTTATCATACTGGCGATAGACCCTTCAAGTGTGAGATTTGCGATAAAAGTTTTGTATGTTCCAACTATCTGAAAAAACATCGTGACTATACAGGTCACAACAAATTGTTCTCGACACCAGTCaacatttccaattcaaatgtttCCGAACATCCCAGTTCAAACGAGAGAAAGAAATCGTTATGTCCCATTTGTGGAATATACTTGTCGTCCAAGACATGTCTACCATCACACGTTAGAACGCACACGGGTGAGAAACCCTTCAAGTGTGATTTTTGCGTAAAGGCCTTCGCACGTAAAACCAATTTACTTACTCACCGACGAAAACACACTGGTGAACGGCCCTACAAATGTAAGACATGCGGCAAAGCATTTAAGCAAAACTCTCAATTAAATGTTCATAACCGCATGCACACCGGCGAACGCCCCTACAAGTGCAAGTTTTGTCAGAGAACATTTACGACATCGGACTCACTGAGACTACATTTGCGTAATCATACAGGCGAGAATCTTTCTAGGTGTGACATTTGCGGTAAAGCTTTCGTATTGCCCGCCTATCTGAAAAGACATCGTATTGCAATGGGTCATCACgttgaaaaagtttaa
Protein Sequence
MSNYINNECFINEIQYKCRTCFDPGQSVFSLTAECSNSKTWRDLLEEIAQFQPIEDELLLPRTVCCKCLDKIISFYDFILQIHNVNKKYSQLLGKCEDGISNEIDNFTDCLAESANDLPLEMLMTEIKLEETQIVPYDIVYSDNNKLQKLEYTDDIPIALLQQAKKRKCIKSSVKRVKQDLEETATPIVTVCQLEILLTPLELFKKLFDDDLLQLIAQYSNDYASKQKATANVTPDEIRCFIAMWLQYCQKEPIMKLIKLHYLVPAIPGSLNEQNNQSSNDNENKFRSSSSDESDYLPENDISKSQPSEKTTFEIDSDYALIKKVNNYYQCVVCKTSFKLQKNCRRHIKEAHSSQNEDSSSSSDESDYDYESAYRHKIPLKKGSERDKIEKVNNNFVCLICKQTFTLQKNCRRHIIIKHPQKTVLYPCGLCDLHFNCKNYLQLHLKRMHPGESLGSNYKHIQRLFGDRIYSKPAAWCLVECKLCDTQFTTTKELRQHLKNHRNVNSLHGLDLDSNIVQHLFPEMLDLDVLKESICNDIREEDWFKYYTVLNENFYEMSVSDTEAEDLLEDTAEGVGKYKCELCFEDFLHKYQVFSHLKEFHSKEEIPLKCRRCKLEFISIKMHEDHRKTHCRNKNKVLLCTRCPAKFVWPENLKKHKCATKIPPENWPSTTKDQLKCNICELEFEEKAEYQVHLASHSVSRTASAKAIIRCGLCAQYFQKLEHLRQHMPLHADGVTGIDFKDCIYVKCFERSKSIDLVPMQLRIQNAYIKSQISCFYQAIDKYGNELDLSDSDSNTEENADDGQTIKRQYGCDICKQMFAKRKLLLNHQQEQHNNVPLPFTCKDCNQPYVSLDLLQQHLKRVCWNEHRRIAQQCDYCKARFIWPNNLLKHKEIQNHTTTDVQLHYCLLCPKTFFSVEDVKEHLGRHCVTPADVKTVESIVNSTWWPNGDKIIKCKLCGLTFETMAKLSEHYSPTNPHTSCANSHSLANYSITNQKGFELHLELDSETEVEDEQEAHEHTGDDIKTLYPYSCCMCSKSFMRKYQIAQHQRSMHNYELLQLKCERCIFRTVSREFLDYHKDTQCFNDEKIYDCDQCHFKFMWKENLDNHHAIFHTPKEWGKTSYVAIYNQTAPIESNNMESSSNKDEAKVSKPPRIRKVETCTICGVHYQNSTALKVHMMKHRGEKPFKCDICKMDFRRKYDLKDHQVTHTGERPFKCLHCDKGFSRQCKLQEHTRMHTGERPYQCTICQKSFNKSYYLKLHLRYHTGDRPFKCEICDKSFVCSNYLKKHRDYTGHNKLFSTPVNISNSNVSEHPSSNERKKSLCPICGIYLSSKTCLPSHVRTHTGEKPFKCDFCVKAFARKTNLLTHRRKHTGERPYKCKTCGKAFKQNSQLNVHNRMHTGERPYKCKFCQRTFTTSDSLRLHLRNHTGENLSRCDICGKAFVLPAYLKRHRIAMGHHVEKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00259075;
90% Identity
-
80% Identity
-