Cvic016182.1
Basic Information
- Insect
- Calliphora vicina
- Gene Symbol
- -
- Assembly
- GCA_958450345.1
- Location
- OY288234.1:28001329-28010967[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.054 4.8 8.8 4.5 1 23 221 244 221 244 0.96 2 22 0.0029 0.26 12.8 2.7 1 23 287 310 287 310 0.91 3 22 0.091 8 8.1 3.1 1 23 316 339 316 339 0.97 4 22 0.00014 0.012 16.9 0.9 2 23 370 391 369 391 0.96 5 22 9.3 8.1e+02 1.8 3.9 1 23 468 491 468 491 0.95 6 22 0.3 26 6.5 1.6 2 23 499 520 498 520 0.97 7 22 2 1.8e+02 3.9 0.1 2 20 529 547 528 549 0.92 8 22 0.019 1.6 10.3 0.1 2 23 566 587 565 587 0.97 9 22 0.022 1.9 10.1 0.3 1 23 613 635 613 635 0.96 10 22 0.069 6.1 8.5 0.2 2 19 662 679 661 681 0.93 11 22 0.0022 0.19 13.2 4.5 1 23 738 761 738 761 0.98 12 22 0.17 15 7.2 1.4 1 23 798 821 798 821 0.95 13 22 0.0019 0.16 13.4 0.4 2 23 868 889 868 889 0.98 14 22 0.00016 0.014 16.8 1.4 1 23 895 917 895 917 0.98 15 22 1.5e-05 0.0013 20.0 2.9 1 23 923 945 923 945 0.98 16 22 6.2e-07 5.4e-05 24.4 2.8 1 23 951 973 951 973 0.99 17 22 0.015 1.3 10.6 5.7 1 19 979 997 979 998 0.98 18 22 0.0035 0.3 12.6 0.1 3 23 1032 1052 1031 1052 0.98 19 22 0.048 4.2 9.0 4.3 1 23 1058 1080 1058 1080 0.99 20 22 5.7e-06 0.0005 21.3 0.7 1 23 1086 1108 1086 1108 0.98 21 22 5.7e-05 0.005 18.2 5.1 1 23 1114 1136 1114 1136 0.99 22 22 0.00025 0.022 16.1 0.1 2 20 1143 1161 1142 1166 0.93
Sequence Information
- Coding Sequence
- ATGAGCAATTATATTAATAATGAGTGTCTTATAAATGGAATTCAATATAAATGTCGTACATGCTTTGATCCAGGACAATCAGTTTATTCCCTTACAGCTGAATGCAGCAACTCAAAAACCTGGCGTGATTTATTAAAGGAAATTGCACAGTTTCAGGCTATCGAGGATGAGCTACTACTACCAAGGACTGTGTGCTGTAAATGTTTGGATAAAATTATAAGTTTCTATGATTTTATACTGCAGATacaaaatgtgaataaaaaatacTCTCAATTATTGGGAAGATGTGAGAATGGggtttcaaatgaaattgacaATTTTACTGATTGTCTGGCAGAGTCTGCTAATGTTTTGCCGTTGGAGATGGTAATTCCGGAAATTAAAGTGGAAGAAACGCAGATTGTTCCATACGACATTGTTTACTGTGAGAATAATAAACtgcaaaaattggaaaatacagACGGTCATGACCCTTTTATAGAAACGAGTGATGAGGGTAAAAATTCAATGTCAGTGCAAATGGAAGAAATCCAAAGatCACTAACTGAACAAAATAATCAAAGTTCAAACGATGACGAAAATAAATTCAGCCAACCGAGCGAACAAACTACATTTGAGAAAGATTCAGACTATGCGCTAATCAAGAAAGTGAACAATCATTTTCAATGTGTCGTATGTAAGACATCATTTAAGTTTCAAAAAGATTGTCGTCGACATATAAAAGCCTCACACTCTAGCCAAAATAAAGATAGctCCTCGTCATCCAATGAAAGTGATTATGATTATGAGTCAGCTTATAGACAACTAATCCCACTAACAGAATTGTCAGAATATCTAATCGAAAAAGTCAACAATCGTTTCGTATGTCCTAtatgtaaaaaaacatttacgtTACGAAGGAATTGTCGTCGGCATATTTTTGCAATACACTCACATGAAACCATATATCCTTGTGGATTTTGTGATCAACATTTTAACTGCAAAAACGACTTAGAAATACATCTTAAACGTATACATCCAAGTGAATCACTCGGCTCAAACTCTAAGCATATACAACGATTATTTGGAGATCGTTTATACAGCAAGCCTGCAGCTTGGTATCTGGTCGAATGTAAATTGTGTgatacaacatttacaacaacTAAAGAACTTCGTCAGCACTTGGAAAATCACAGGGATGTAAACTCTCTTCGTGGCTTAGACTTGGACAGTAATATTGTCCAGCATTTATTTCCAGAAATGATTGATTTGGATGTTCTCAAGGAAAGTATATGCAATGATATTCGTGAGGAAGATTGGTTCAAATATTACAAAGTGTTAaatgaacatttttatgaaatgtcTGTTAGTGATACAGAAGCAGAAGATTTGCTAGAAGAAACAGCAGAGCGTGTTGGCAAATACAAGTGTGAATTGTGTTTTGAAGATTTCTTGTATAAATACCAAGTTTTCTCCCATTTAAAAGAATGTCATAACAAAGAAGACATCCCTTTGAAATGTAGACGATGCAAATtggaatttatttcaataaaaatgtacGAAGATCACAGAAAAACGCATTgccgaaataaaaataaagttttacctTGTTCAAGTTGCCCGGCCAAGTTTGTTTGGCcggaaaatttggaaaaacacaagtgTGCCACAAAAAAAACACCGCAGAACTGGCCCACTATTCCTAAAGATAAACTAAAATGTAACATATGCGAACTGGAATTCGAGGAAAATGCAGAATATCAAGAGCATTTAGTGACACATAGTAATTGCAGGACCGCAAATAATCTATTGAAACACAAAGAAATACAGAATCACATGACAACCGATGTTCAAATTTATTACTGTCTCCTGTGCCCAAAAACTTTCTTTAGTGTTGAAGATGTTAAAGAGCACTTAGGTCGACACAGTGTAACACCAGCTGATGTCAAGACTGTTGAAAGTATAGTAAATTCTACATGGTGGCCAAACGgtaacaaaacaattaaatgtaAACTATGTGGCCTAACATTTGAAACTATGGCAAAATTAAGTGAACATTTTTCACCTACAAATCCACATACATCGTGCGCTAATTCACATTCACTGGCGAATTACTCAATTACAAATCAAAAAGGATTCGAATTGCATTTAGATCTAGATTCTGAAACAGAATTAGAAGATGAGCAAGAAGCGGATGAACATAAAGGAGACAATATACAGACTTTATATCCCTACAGCTGTTGCATGTGCAGTAAGTCGTTTATGCGAAAATATCAAATAGCTCAACATCAGCGATCTATGCATAATTATGAATTGCTACAGCTAAAGTGTGAACGTTGTATATTTAGAACAGTCTCACAGgaatttttagaTTATCATAAAGATACGCAGTGTTTTAATGATGAAAAGATTTACGAATGTGATCAGtgccattttaaatttatgtggcAAGAGAATCTAGATAATCATCAAGCTATATTTCATACTCCCAAAGAATGGGGAAAAGCAACGGATGTAGCGATTTATAATCAGTCTGCGCCAATCGAGATCAATACTATGGAGTCATCATCAAATAACGACGATGCAAAAGTTAGCAGACCATCAAGAATAACAAAAGGAGAGACATGTACAATTTGTGGGGTGTACTTCAAAAAAGGTTCAGTCCTTAAGGTACACATGATGAAGCACAGGGGTGTGAAACCGTTCAAATGTGATATTTGCAAAAAGTCCTTTTTACGCAATATCGAGTTAAAGAATCACCAAGTCACACACACTGGCAAACGTCCCTTCAAGTGTCTACATTGCGATAAAGGATTTGCACGACAATACTTATTACGAGAACACACGCGTCTGCACACTGGCGAACGTCCTTACCAGTGCACAATTTGTCAGAAATCATTTAACAATTCGTCCTATCTGAAACTCCATTTGCGTTATCATACTGGCGATAGACCCTTCAAGTGTGATATTTGCGGTAAAAGTTTTGTATGTTCCAGCTATCTGAAAAAACATTGTGACAGTACAGGTCACAACAAATTGTTTTCAACGTCAGTCaacatttccaattcaaatgtttCCGAAGAGCCCAGATCAAGCGGGAGAAATAAATCGTTATGTCCCATTTGTGGAATATACTTGTCGCCCAATTCAAGTCTAACATTACACCTTAGATTGCACACGGGTGAGAGACCCTTCaagtgtgatttttgcgaaagTGCCTTCGTATGTAAAACCGATTTAAATAAACATCGACGAACACACACTGGTGAACGGCCCTTCAAATGTACGGTATGCGGTAAAGGATTTCCGCAAAACTATAAATTAACTATTCATAACCGCATACACACCGGCGAACGTCCCTACAAGTGCAAGTTTTGTCAGAGAACATTTGCGCATTCGGATTATCTGAGACTACATTTGCGTAATCATACAGGCGAGAATCTTTCTAGGTGTGACATTTGCGGTAAATCTTTCGTATTGCCTGTTTATCTGAGACGACATCGTGTTGCAATGGGTCatcactag
- Protein Sequence
- MSNYINNECLINGIQYKCRTCFDPGQSVYSLTAECSNSKTWRDLLKEIAQFQAIEDELLLPRTVCCKCLDKIISFYDFILQIQNVNKKYSQLLGRCENGVSNEIDNFTDCLAESANVLPLEMVIPEIKVEETQIVPYDIVYCENNKLQKLENTDGHDPFIETSDEGKNSMSVQMEEIQRSLTEQNNQSSNDDENKFSQPSEQTTFEKDSDYALIKKVNNHFQCVVCKTSFKFQKDCRRHIKASHSSQNKDSSSSSNESDYDYESAYRQLIPLTELSEYLIEKVNNRFVCPICKKTFTLRRNCRRHIFAIHSHETIYPCGFCDQHFNCKNDLEIHLKRIHPSESLGSNSKHIQRLFGDRLYSKPAAWYLVECKLCDTTFTTTKELRQHLENHRDVNSLRGLDLDSNIVQHLFPEMIDLDVLKESICNDIREEDWFKYYKVLNEHFYEMSVSDTEAEDLLEETAERVGKYKCELCFEDFLYKYQVFSHLKECHNKEDIPLKCRRCKLEFISIKMYEDHRKTHCRNKNKVLPCSSCPAKFVWPENLEKHKCATKKTPQNWPTIPKDKLKCNICELEFEENAEYQEHLVTHSNCRTANNLLKHKEIQNHMTTDVQIYYCLLCPKTFFSVEDVKEHLGRHSVTPADVKTVESIVNSTWWPNGNKTIKCKLCGLTFETMAKLSEHFSPTNPHTSCANSHSLANYSITNQKGFELHLDLDSETELEDEQEADEHKGDNIQTLYPYSCCMCSKSFMRKYQIAQHQRSMHNYELLQLKCERCIFRTVSQEFLDYHKDTQCFNDEKIYECDQCHFKFMWQENLDNHQAIFHTPKEWGKATDVAIYNQSAPIEINTMESSSNNDDAKVSRPSRITKGETCTICGVYFKKGSVLKVHMMKHRGVKPFKCDICKKSFLRNIELKNHQVTHTGKRPFKCLHCDKGFARQYLLREHTRLHTGERPYQCTICQKSFNNSSYLKLHLRYHTGDRPFKCDICGKSFVCSSYLKKHCDSTGHNKLFSTSVNISNSNVSEEPRSSGRNKSLCPICGIYLSPNSSLTLHLRLHTGERPFKCDFCESAFVCKTDLNKHRRTHTGERPFKCTVCGKGFPQNYKLTIHNRIHTGERPYKCKFCQRTFAHSDYLRLHLRNHTGENLSRCDICGKSFVLPVYLRRHRVAMGHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -