Cvic026100.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calliphora vicina
Gene Symbol
-
Assembly
GCA_958450345.1
Location
OY288235.1:114617577-114620538[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00027 0.023 16.1 0.4 1 23 161 184 161 184 0.97
2 16 0.0012 0.1 14.1 1.6 1 22 190 211 190 213 0.90
3 16 3.6e-08 3.2e-06 28.2 2.7 1 23 216 238 216 238 0.98
4 16 3e-06 0.00026 22.2 0.3 1 23 244 268 244 268 0.97
5 16 0.0007 0.061 14.7 3.9 1 23 273 295 273 295 0.97
6 16 0.00065 0.057 14.8 0.3 3 23 303 323 301 323 0.98
7 16 0.00023 0.02 16.3 4.7 1 23 329 351 329 351 0.95
8 16 3.7e-06 0.00032 21.9 0.0 1 23 357 379 357 379 0.98
9 16 0.0015 0.13 13.7 0.2 1 23 517 540 517 540 0.93
10 16 0.15 13 7.5 6.7 1 21 546 566 546 569 0.95
11 16 4.4e-07 3.9e-05 24.8 2.0 1 23 572 594 572 594 0.98
12 16 0.00016 0.014 16.8 0.6 1 23 600 624 600 624 0.96
13 16 0.004 0.35 12.4 4.3 1 23 629 651 629 651 0.97
14 16 0.00057 0.05 15.0 0.4 3 23 659 679 657 679 0.97
15 16 0.0004 0.035 15.5 4.8 1 23 685 707 685 707 0.94
16 16 3.7e-06 0.00032 21.9 0.0 1 23 713 735 713 735 0.98

Sequence Information

Coding Sequence
atgttaaaaaattgctttttaccggtaaattataataaaccaGTCTCACAAACATGTGGAGAAATTATCTGCGAAAATCTGCAAGAATTTATAATCAattgtaaattgtgtaaaatcaaGATATTCGAGTTTGAAGAATTTGTACAGCACTTTAAGAATGTCCATTTGGATGCTAGTAATGACAACAAACAAGAGAAGAAGCCTGCAGAAAATCGTGAAGAACatgaaaacattgaaaattttgaacatGTTATAAAGTTGGAAATCACCGAAGCAGCGGATCACAAAAAGGATGAACGATTGGAAAACGAAAATGAGGAGATTACAGGAAATAATGAAGAATTCTTATGGGATGTGGACAATAATACATATTCGGATGAGGACAAAGATTATGAAGGCAATTCAGAGGATGACGAAGGCCAGGAGGATGATGAAGAACAAAGTAAAAGTATAATGAGAAAGCCCCGAAAACCCAAAGAGTTTTCATgtgaaatttgtaataaaaagtaTGCGGACTCCAGGCGTTTGCAATTACATGTGAAAATAGTACATTTACGTGAGAAACCTTACAAATGTTCTATGTGTGATCAGTCGTTTGCTGAAGAACGTTCCCTAAAAAATCACGTTGGCCATAAGCACACCGGTTATGAGTGCCCAGAATGTCATAAGAACTTTACCACAAATCGCAATCTCAAACGTCACATGTTAATACATTTAGATAAAAAGGAATTTGTATGCAGTGAGGATAATTGCGGCAAAGCTTTTGCCACCAAGGGTCAACTGAAAGATCATCAACGTTATCACAATAGCGAAATGTTTATATGTGAAGAATGTGGCTACAAGTGTCGCCAGCGAGAATCACTAATTGTACATAAACGCCATCACACGGGTGAGAAACCATTTGGCTGTAAACTTTGTGAGCGTCGGTTTGGTTCGAAACCTTTACTCAATGAACACATGGCTACACACGAAACGGAACGTAAACATGTTTGTGAAGTGTGTGGTAAAAGTTTTAACCGGCCCAAGGCTCTGTACCATCACAAACATTTGCATTTGGGtgtaaagaaatttgtttgtaaaatctGTGGCCAGGCTTATGCTCAAGCGGCCGGTCTATCGGCCCACATGCGAAAACATAGAGAAGATGGAGCCTCTTTTACCACCGAAGCTCCCTTACCACCTAATAACGCTAATATAATATTCGAGTTTGAAGAATTCATACAGCATTTTAAGAATGTTCATTTGGAAATAAAAGATGAAAGCAGAACAAGTAAGCCGGCAACATCTAAATGGGAACTGGAAGAAGAAGGAAATGAACGAATAATAAagttagaaattacaaaaaatgtgcACCAAAACGCTACAGAATCGAATGCAGATTATCCAACACATACAAAAGATGTTGAAGAATGTATATGGAGTATGGATAATAGTGTGGACTCTGATGAGGACTATGATTTTGAAGCAAATTCTGAAGATGATGGATTGCACGAAGGCGTAGAAGTACAAGGTAAAAGTTTACTGACAAagACCAGAAAACCTAAGGAATATAGCTGTGAAATATGTAGTAAAAAATATGCCGATTCCAGGCGTTTAAAAGTGCACGTAGCACTGGTACATTTACGTGAAAAACCTTTCAAGTGTTCTCAATGTGATGAGACCTGTGCTGAAGAACGCTATCTAAAAAATCACATTCGCTGCCACCACACCGGATTCGAATGTCCAGAGTGTCATAaaagatttaaaacaaatcCCAGTCTAAAACGTCATTTGTTAAtacatgtaaaaaaaaaagattttatttgtAATGAGAAAAATTGTGGCAAAGATTTTCCTACCCAGGGGAGGTTGCGAGAGCATCAACGTTATCACAATAGCGAAATGTTTATATGTGAAGAATGTGGGTACAAGTGTCGGAAACGGGAATCATTAGTTGTACATAAACGTCATCATACGGGAGAGAAACCATTTGGCTGTAAACTTTGTGAACGTCGATTTGGTTCGAAAGAGTTACTAAACGAACACATGGCCAGTCATGAAACTGTGCGTAAGCATATTTGTGATGTTTGTGGTAAAAGTTTTAATAGGCCCAAGGCACTATATCATCACAAACACTTGCATTTGGGtgtaaagaaatttgtttgtaaaatatgtGGCCAGGCATATGCACAAGCAGCTGGTCTATCGGCCCACATGCGTAAACATAGAGAAAACGTTAACTCATTTACGGTCAATACTACCCCCTAG
Protein Sequence
MLKNCFLPVNYNKPVSQTCGEIICENLQEFIINCKLCKIKIFEFEEFVQHFKNVHLDASNDNKQEKKPAENREEHENIENFEHVIKLEITEAADHKKDERLENENEEITGNNEEFLWDVDNNTYSDEDKDYEGNSEDDEGQEDDEEQSKSIMRKPRKPKEFSCEICNKKYADSRRLQLHVKIVHLREKPYKCSMCDQSFAEERSLKNHVGHKHTGYECPECHKNFTTNRNLKRHMLIHLDKKEFVCSEDNCGKAFATKGQLKDHQRYHNSEMFICEECGYKCRQRESLIVHKRHHTGEKPFGCKLCERRFGSKPLLNEHMATHETERKHVCEVCGKSFNRPKALYHHKHLHLGVKKFVCKICGQAYAQAAGLSAHMRKHREDGASFTTEAPLPPNNANIIFEFEEFIQHFKNVHLEIKDESRTSKPATSKWELEEEGNERIIKLEITKNVHQNATESNADYPTHTKDVEECIWSMDNSVDSDEDYDFEANSEDDGLHEGVEVQGKSLLTKTRKPKEYSCEICSKKYADSRRLKVHVALVHLREKPFKCSQCDETCAEERYLKNHIRCHHTGFECPECHKRFKTNPSLKRHLLIHVKKKDFICNEKNCGKDFPTQGRLREHQRYHNSEMFICEECGYKCRKRESLVVHKRHHTGEKPFGCKLCERRFGSKELLNEHMASHETVRKHICDVCGKSFNRPKALYHHKHLHLGVKKFVCKICGQAYAQAAGLSAHMRKHRENVNSFTVNTTP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-