Cvic013453.1
Basic Information
- Insect
- Calliphora vicina
- Gene Symbol
- -
- Assembly
- GCA_958450345.1
- Location
- OY288233.1:103532976-103550242[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 36 1.1 92 4.7 0.4 3 23 241 262 239 262 0.93 2 36 0.24 21 6.8 0.2 6 23 271 288 271 288 0.98 3 36 0.00088 0.077 14.4 2.9 1 23 294 317 294 317 0.97 4 36 0.0017 0.15 13.6 0.1 2 23 323 344 322 344 0.95 5 36 0.00057 0.049 15.0 1.0 2 23 353 375 352 375 0.94 6 36 0.014 1.2 10.7 2.7 2 23 412 433 411 434 0.94 7 36 7.1e-06 0.00062 21.0 0.2 3 23 445 466 443 466 0.96 8 36 3.7e-06 0.00032 21.9 0.8 2 23 473 494 472 494 0.97 9 36 0.0025 0.22 13.0 1.8 1 23 500 523 500 523 0.95 10 36 1.1 92 4.7 0.4 3 23 636 657 634 657 0.93 11 36 0.24 21 6.8 0.2 6 23 666 683 666 683 0.98 12 36 0.00088 0.077 14.4 2.9 1 23 689 712 689 712 0.97 13 36 0.0017 0.15 13.6 0.1 2 23 718 739 717 739 0.95 14 36 0.00057 0.049 15.0 1.0 2 23 748 770 747 770 0.94 15 36 0.014 1.2 10.7 2.7 2 23 807 828 806 829 0.94 16 36 7.1e-06 0.00062 21.0 0.2 3 23 840 861 838 861 0.96 17 36 3.7e-06 0.00032 21.9 0.8 2 23 868 889 867 889 0.97 18 36 0.0025 0.22 13.0 1.8 1 23 895 918 895 918 0.95 19 36 1.1 92 4.7 0.4 3 23 1031 1052 1029 1052 0.93 20 36 0.24 21 6.8 0.2 6 23 1061 1078 1061 1078 0.98 21 36 0.00088 0.077 14.4 2.9 1 23 1084 1107 1084 1107 0.97 22 36 0.0017 0.15 13.6 0.1 2 23 1113 1134 1112 1134 0.95 23 36 0.00057 0.049 15.0 1.0 2 23 1143 1165 1142 1165 0.94 24 36 0.014 1.2 10.7 2.7 2 23 1202 1223 1201 1224 0.94 25 36 7.1e-06 0.00062 21.0 0.2 3 23 1235 1256 1233 1256 0.96 26 36 3.7e-06 0.00032 21.9 0.8 2 23 1263 1284 1262 1284 0.97 27 36 0.0025 0.22 13.0 1.8 1 23 1290 1313 1290 1313 0.95 28 36 1.1 92 4.7 0.4 3 23 1522 1543 1520 1543 0.93 29 36 0.24 21 6.8 0.2 6 23 1552 1569 1552 1569 0.98 30 36 0.00088 0.077 14.4 2.9 1 23 1575 1598 1575 1598 0.97 31 36 0.0017 0.15 13.6 0.1 2 23 1604 1625 1603 1625 0.95 32 36 0.00057 0.049 15.0 1.0 2 23 1634 1656 1633 1656 0.94 33 36 0.014 1.2 10.7 2.7 2 23 1693 1714 1692 1715 0.94 34 36 2.4e-06 0.00021 22.5 0.2 3 23 1726 1747 1724 1747 0.96 35 36 3.7e-06 0.00032 21.9 0.8 2 23 1754 1775 1753 1775 0.97 36 36 0.0025 0.22 13.0 1.8 1 23 1781 1804 1781 1804 0.95
Sequence Information
- Coding Sequence
- atgaattGTTTATTGTGTTTCAAAGTATCAGAAAACATTAAAGAAATTCTTACAGTTAATTCCGCCGATTGGCAAGAACAAAATATACAACACATCGTTGAAAAATATCTGTGGAAAatggaacatataaaaatcgacTCCCATGTATGCCTAACATGTTGGAAGGAATTATACAATTTCCATAGATTCTACACTGAGATAGAAAAGTCACATAAACATTTGAATAGTTTCATGAAAACGGATGTAATTTCTGATGATATTTACAACGGAAAAAAAGAATTACTTGAAacaaattctaaagaaaatgtagaaaattatcAACTTGAGCCAGAAATTCTATTGATAAAACAAGAAAATCCTTTAGAAGTTTATGAAACAGAGTTAGTACAGGAATTTAATCAtgtaaaacgaaaaataaaacgTAAATGCTCtactaaaaaagttaaaaatgtaataaaatatcgTAAAACAAGATCTGAGAAAGAAAGAATTAAAGCTGAATTGGCAGATATAGAAAAGCCCACACAAATTGCCATAAAATTGGAAGTGGATGTGGAAAATGACACTAAAGAAAGTAATTCTATTGCAAATATTGAAGATCAAGATGATATTAGCTGTGAAAGTGATGACGAACCAACAAATACGATCGATTCAGCTAAAACTCATATCCAACGCGAAAGAAATGATAAATTCATAGCCGAACATTTTGAAATGACCAACTGTAGCTTTTGTCAAATACCATTGGCAACATTTTCCACACTGATTAAACATTTCAAAGAGGAACACAATGAACGTGGATATGCTCTCTGCTGTAATCGAAAGTATTATACCCGTACGGAATTAATAGATCATATTAAGTGGCATATAAATCCAGAGCActttaaatgcaaatattgtGATAAAATATTGTCTAGTCGTGTCTGCTTGAAGTTACACATAAAAAATGTTCATGATCAAATGAGTATTGAGTGCGATATTTGTGGCAAAAGTTTGGCAAATGTATACAGTCTCAAAACGCATAAACTATTACACGTTGTGAAAGATAATGAAAGAATACCATGTACACATTGTGATAAGTCCTTCGTCTCTAAACAATTCCTAGACAATCATATAAGCAATGTTCATTTAAAGAAATACCATAAAATATGCGATCTATGTGGTGTTTCCATATTAGAAAAGCAAAGATTTAAACGACACATGCTAGAACATCAAGGTAAACCACTACCAAAGGTAAGTTGTGAGGTTTGTGGTCGTCTTCTGTCCGATGTGAAATGTTTAAAGCGACACATGAACTCACATCATCCGCCGGAAGGTGTTAAAACCGAAATTGATTGTCCTATATGCAAGAAAATGTTTGCTAATCGTACCAGTCTTAAGAATCACATAAAAGTTGTTCACGAAAATAGTTGCGAAAGTAAATGTACAATGTGTGAGAAGACATTTAAAAGGCCGGATGctttaaagGATCATATGGCTAAGCATATCGGCAAGCCGTTACATGCTTGCGGGTGGTGTCCCAAGTCATTTTATTCAAACGGCCAGATGCATGCTCATAGAAAAAGTGTGCATCCAATGGAATGGCAAGAATCAGTGCGAGAAAAACATTCTGGAAATTTACcagaaaaatatatatcaaaatctTTACAAAATGAATATGAATCTGAGAAAGAAAGAATTAAAGCTGAATTGGCAGATATAGAAAAGCCCACACAAATTGCCATAAAATTGGAAGTGGATGTGGAAAATGACACTAAAGAAAGTAATTCTATTGCAAATATTGAAGATCAAGATGATATTAGCTGTGAAAGTGATGACGAACCAACAAATACGATCGATTCAGCTAAAACTCATATCCAACGCGAAAGAAATGATAAATTCATAGCCGAACATTTTGAAATGACCAACTGTAGCTTTTGTCAAATACCATTGGCAACATTTTCCACACTGATTAAACATTTCAAAGAGGAACACAATGAACGTGGATATGCTCTCTGCTGTAATCGAAAGTATTATACCCGTACGGAATTAATAGATCATATTAAGTGGCATATAAATCCAGAGCActttaaatgcaaatattgtGATAAAATATTGTCTAGTCGTGTCTGCTTGAAGTTACACATAAAAAATGTTCATGATCAAATGAGTATTGAGTGCGATATTTGTGGCAAAAGTTTGGCAAATGTATACAGTCTCAAAACGCATAAACTATTACACGTTGTGAAAGATAATGAAAGAATACCATGTACACATTGTGATAAGTCCTTCGTCTCTAAACAATTCCTAGACAATCATATAAGCAATGTTCATTTAAAGAAATACCATAAAATATGCGATCTATGTGGTGTTTCCATATTAGAAAAGCAAAGATTTAAACGACACATGCTAGAACATCAAGGTAAACCACTACCAAAGGTAAGTTGTGAGGTTTGTGGTCGTCTTCTGTCCGATGTGAAATGTTTAAAGCGACACATGAACTCACATCATCCGCCGGAAGGTGTTAAAACCGAAATTGATTGTCCTATATGCAAGAAAATGTTTGCTAATCGTACCAGTCTTAAGAATCACATAAAAGTTGTTCACGAAAATAGTTGCGAAAGTAAATGTACAATGTGTGAGAAGACATTTAAAAGGCCGGATGctttaaagGATCATATGGCTAAGCATATCGGCAAGCCGTTACATGCTTGCGGGTGGTGTCCCAAGTCATTTTATTCAAACGGCCAGATGCATGCTCATAGAAAAAGTGTGCATCCAATGGAATGGCAAGAATCAGTGCGAGAAAAACATTCTGGAAATTTACcagaaaaatatatatcaaaatctTTACAAAATGAATATGAATCTGAGAAAGAAAGAATTAAAGCTGAATTGGCAGATATAGAAAAGCCCACACAAATTGCCATAAAATTGGAAGTGGATGTGGAAAATGACACTAAAGAAAGTAATTCTATTGCAAATATTGAAGATCAAGATGATATTAGCTGTGAAAGTGATGACGAACCAACAAATACGATCGATTCAGCTAAAACTCATATCCAACGCGAAAGAAATGATAAATTCATAGCCGAACATTTTGAAATGACCAACTGTAGCTTTTGTCAAATACCATTGGCAACATTTTCCACACTGATTAAACATTTCAAAGAGGAACACAATGAACGTGGATATGCTCTCTGCTGTAATCGAAAGTATTATACCCGTACGGAATTAATAGATCATATTAAGTGGCATATAAATCCAGAGCActttaaatgcaaatattgtGATAAAATATTGTCTAGTCGTGTCTGCTTGAAGTTACACATAAAAAATGTTCATGATCAAATGAGTATTGAGTGCGATATTTGTGGCAAAAGTTTGGCAAATGTATACAGTCTCAAAACGCATAAACTATTACACGTTGTGAAAGATAATGAAAGAATACCATGTACACATTGTGATAAGTCCTTCGTCTCTAAACAATTCCTAGACAATCATATAAGCAATGTTCATTTAAAGAAATACCATAAAATATGCGATCTATGTGGTGTTTCCATATTAGAAAAGCAAAGATTTAAACGACACATGCTAGAACATCAAGGTAAACCACTACCAAAGGTAAGTTGTGAGGTTTGTGGTCGTCTTCTGTCCGATGTGAAATGTTTAAAGCGACACATGAACTCACATCATCCGCCGGAAGGTGTTAAAACCGAAATTGATTGTCCTATATGCAAGAAAATGTTTGCTAATCGTACCAGTCTTAAGAATCACATAAAAGTTGTTCACGAAAATAGTTGCGAAAGTAAATGTACAATGTGTGAGAAGACATTTAAAAGGCCGGATGctttaaagGATCATATGGCTAAGCATATCGGCAAGCCGTTACATGCTTGCGGGTGGTGTCCCAAGTCATTTTATTCAAACGGCCAGATGCATGCTCATAGAAAAAGTGTGCATCCAATGGAATGGCAAGAATCAGTGCGAGAAAAACATTCTGGAAATTTACcagaaaaatatatatcaaaatctTTACAAAATGAATATGAATTCTACACTGAGATAGAAAAGTCACATAAACATTTGAATAGTTTCATGAAAACGGATGTAATTTCTGATGATATTTACAACGGAAAAAAAGAATTACTTGAAacaaattctaaagaaaatgtagaaaattatcAACTTGAGCCAGAAATTCTATTGATAAAACAAGAAAATCCTTTAGAAGTTTATGAAACAGAGTTAGTACAGGAATTTAATCAtgtaaaacgaaaaataaaacgTAAATGCTCtactaaaaaagttaaaaatgtaataaaatatcgTAAAACAAGATCTGAGAAAGAAAGAATTAAAGCTGAATTGGCAGATATAGAAAAGCCCACACAAATTGCCATAAAATTGGAAGTGGATGTGGAAAATGACACTAAAGAAAGTAATTCTATTGCAAATATTGAAGATCAAGATGATATTAGCTGTGAAAGTGATGACGAACCAACAAATACGATCGATTCAGCTAAAACTCATATCCAACGCGAAAGAAATGATAAATTCATAGCCGAACATTTTGAAATGACCAACTGTAGCTTTTGTCAAATACCATTGGCAACATTTTCCACACTGATTAAACATTTCAAAGAGGAACACAATGAACGTGGATATGCTCTCTGCTGTAATCGAAAGTATTATACCCGTACGGAATTAATAGATCATATTAAGTGGCATATAAATCCAGAGCActttaaatgcaaatattgtGATAAAATATTGTCTAGTCGTGTCTGCTTGAAGTTACACATAAAAAATGTTCATGATCAAATGAGTATTGAGTGCGATATTTGTGGCAAAAGTTTGGCAAATGTATACAGTCTCAAAACGCATAAACTATTACACGTTGTGAAAGATAATGAAAGAATACCATGTACACATTGTGATAAGTCCTTCGTCTCTAAACAATTCCTAGACAATCATATAAGCAATGTTCATTTAAAGAAATACCATAAAATATGCGATCTATGTGGTGTTTCCATATTAGAAAAGCAAAGATTTAAACGACACATGCTAGAACATCAAGGTAAACCACTACCAAAGGTAAGTTGTGAGGTTTGTGGTCGTCTTCTGTCCGacgtaaaatgtttaaagcggcACATGAACTCACATCATCCGCCGGAAGGTGTTAAAAACGAAATTGATTGTCCTATATGCAAGAAAATGTTTGCTAATCGTACCAATCTTAAGAACCACATAAAAGTTGTTCACGAAAATAGTTGTGAAAGTAAATGTACAATGTGTGAGAAGACATTTAAAAGGCCGGATGCgttaaagGATCATATGGCTAAGCATATCGGCAAGCCGTTACATGCTTGCGGTTGGTGTCCCAAGTCATTTTATTCAAACGGCCAGATGCATGCTCATCGTAAAAGTGTGCATCCAATGGAATGGCAAGAATCAGTGCGAGAAAAACATTCTGGAAATTTAccagaaaaatatatttcaaaatctttacaAAATGAATATGAGTATattctgtaa
- Protein Sequence
- MNCLLCFKVSENIKEILTVNSADWQEQNIQHIVEKYLWKMEHIKIDSHVCLTCWKELYNFHRFYTEIEKSHKHLNSFMKTDVISDDIYNGKKELLETNSKENVENYQLEPEILLIKQENPLEVYETELVQEFNHVKRKIKRKCSTKKVKNVIKYRKTRSEKERIKAELADIEKPTQIAIKLEVDVENDTKESNSIANIEDQDDISCESDDEPTNTIDSAKTHIQRERNDKFIAEHFEMTNCSFCQIPLATFSTLIKHFKEEHNERGYALCCNRKYYTRTELIDHIKWHINPEHFKCKYCDKILSSRVCLKLHIKNVHDQMSIECDICGKSLANVYSLKTHKLLHVVKDNERIPCTHCDKSFVSKQFLDNHISNVHLKKYHKICDLCGVSILEKQRFKRHMLEHQGKPLPKVSCEVCGRLLSDVKCLKRHMNSHHPPEGVKTEIDCPICKKMFANRTSLKNHIKVVHENSCESKCTMCEKTFKRPDALKDHMAKHIGKPLHACGWCPKSFYSNGQMHAHRKSVHPMEWQESVREKHSGNLPEKYISKSLQNEYESEKERIKAELADIEKPTQIAIKLEVDVENDTKESNSIANIEDQDDISCESDDEPTNTIDSAKTHIQRERNDKFIAEHFEMTNCSFCQIPLATFSTLIKHFKEEHNERGYALCCNRKYYTRTELIDHIKWHINPEHFKCKYCDKILSSRVCLKLHIKNVHDQMSIECDICGKSLANVYSLKTHKLLHVVKDNERIPCTHCDKSFVSKQFLDNHISNVHLKKYHKICDLCGVSILEKQRFKRHMLEHQGKPLPKVSCEVCGRLLSDVKCLKRHMNSHHPPEGVKTEIDCPICKKMFANRTSLKNHIKVVHENSCESKCTMCEKTFKRPDALKDHMAKHIGKPLHACGWCPKSFYSNGQMHAHRKSVHPMEWQESVREKHSGNLPEKYISKSLQNEYESEKERIKAELADIEKPTQIAIKLEVDVENDTKESNSIANIEDQDDISCESDDEPTNTIDSAKTHIQRERNDKFIAEHFEMTNCSFCQIPLATFSTLIKHFKEEHNERGYALCCNRKYYTRTELIDHIKWHINPEHFKCKYCDKILSSRVCLKLHIKNVHDQMSIECDICGKSLANVYSLKTHKLLHVVKDNERIPCTHCDKSFVSKQFLDNHISNVHLKKYHKICDLCGVSILEKQRFKRHMLEHQGKPLPKVSCEVCGRLLSDVKCLKRHMNSHHPPEGVKTEIDCPICKKMFANRTSLKNHIKVVHENSCESKCTMCEKTFKRPDALKDHMAKHIGKPLHACGWCPKSFYSNGQMHAHRKSVHPMEWQESVREKHSGNLPEKYISKSLQNEYEFYTEIEKSHKHLNSFMKTDVISDDIYNGKKELLETNSKENVENYQLEPEILLIKQENPLEVYETELVQEFNHVKRKIKRKCSTKKVKNVIKYRKTRSEKERIKAELADIEKPTQIAIKLEVDVENDTKESNSIANIEDQDDISCESDDEPTNTIDSAKTHIQRERNDKFIAEHFEMTNCSFCQIPLATFSTLIKHFKEEHNERGYALCCNRKYYTRTELIDHIKWHINPEHFKCKYCDKILSSRVCLKLHIKNVHDQMSIECDICGKSLANVYSLKTHKLLHVVKDNERIPCTHCDKSFVSKQFLDNHISNVHLKKYHKICDLCGVSILEKQRFKRHMLEHQGKPLPKVSCEVCGRLLSDVKCLKRHMNSHHPPEGVKNEIDCPICKKMFANRTNLKNHIKVVHENSCESKCTMCEKTFKRPDALKDHMAKHIGKPLHACGWCPKSFYSNGQMHAHRKSVHPMEWQESVREKHSGNLPEKYISKSLQNEYEYIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -