Cvic023770.1
Basic Information
- Insect
- Calliphora vicina
- Gene Symbol
- -
- Assembly
- GCA_958450345.1
- Location
- OY288235.1:81825604-81830288[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.56 4.6e+02 1.9 0.1 10 44 139 170 134 170 0.79 2 9 0.00042 0.35 11.9 0.5 12 43 200 228 187 229 0.78 3 9 0.00055 0.46 11.5 1.9 16 38 235 254 232 260 0.86 4 9 9.6 8e+03 -2.1 0.0 17 25 419 427 410 438 0.77 5 9 0.32 2.6e+02 2.7 0.9 7 35 468 495 464 498 0.76 6 9 0.0065 5.4 8.1 0.3 17 44 557 581 553 581 0.91 7 9 2.4 2e+03 -0.1 0.4 22 41 590 606 587 607 0.83 8 9 0.00029 0.24 12.4 1.7 12 43 608 636 598 637 0.86 9 9 0.022 18 6.4 1.2 6 28 636 656 636 665 0.81
Sequence Information
- Coding Sequence
- ATGGCATCAACAACATCGTGCCGTTTATGTAGTTTTACTTGTGaagaatttaaatgtttatatgaCGACAATGGCCAGGAAAGTGCAGTTTATCAAATTgcagtcaaatattttaatccatCGctctTGAATTCTGGTACAGATACTACTTTAAGGGTTATTTGTTTAGAATGCTGGCAACATATTAGCGACTTTCACAGTTTTCATCAGTGGATCCTTAATGCTCAAGCACAACAGGAAGATATGGAATTGATCGTACATGAAGAAAAATCGGATGAACAGATTTCGACTTTTGATGTTATTGAGTTTGATTTAATTGATGATACTAGTACATCAAAATCAAGTCACTCGACCAAATCAATTTCTTCGCCAATAAATTCGATAGAAAGTGAAGATGAAAACTATAATGATTCCATAACGAAATTGAGGCGGAAGTTGGAATGCTATAAATGCAAGGACATATTTGAAAGTTTTGCTAATTTAGATGCCcattttcaacaatttcatCCAATTGAccaattttatgttatttgttGCAACGAAAAATTTTATCAGAGATGGAATCTCTTTGAACATTTTCTTGGTTTTCACAAGCAAAAAGATGTAAATCCTTTTAAATGTGAACAATGTGGAGCTTCATTTTCACAATATGGAAACTTAAGAAGACATGTGAGAAGAAAACATACGGTACAGCCATTACTTAAATGGATAtgcaaatattgtaataaaatgtttaaaaatcgaTCAAATTTAGAAAGGCACAAAAATAAGATACATACTTCTCAGTTAAACAATGATTTACAACACGAAAATAAAATTGATGAAGAGGAATATCTAGATAGTTTCGAAATAGACTATGAACCAGAGGAGGATATTCAAGTGGATGCAGTGTATGAAACAAACGACATTTCAAATCTTAATAAATACGAGTCTATATTGAATGCATTTCCCTTAGAAAGTTCGGAAGTCAATAAAGATCTACAAAGTTTGAAGCAAGTTTCTTATAGTAatgatatatatataaaagaagaATCAGATATAGAATTTGACATTACTTCATCATCAACTGACATAAATGCcactaaacaaatacatatgccTGCTTTAGATATTGTTGATATAAAGAATGAAAATTCTACGGATACTGAAAGTGAAGGagacacaaaaaaatttaagaaaaatgtaaaaactaaTGAATTCAACTCAGATTTAGAAAAAGGATATGATGACTTCATAGATAAATGGAAAGGGGATTTGGAATGTCCTAAATGTAATAAACACGTAATAAGTTATCAACAGCTAAGTGAGCATTTTGCTTTGGAGCATCCGGAAGAACGTTGTTATATTAACTGTTGTCACATTACCCTTTATGAACGTACAAGTATTGTTGAGCATTTACGTTTTCATGAAAACCCTAATGCTTTTGAGTGTTCAGATTGCGGCAAATGTTTTAAGAATAGCAAAGGTTTGGGCTCCCATAAGCTACAAGTTCACAGTGACAATCGAAGTGCATATCACTTACATTTATGCTATTGCAAAAGAGCCAAAGAACTACATGCCGAAAATAAAGCTAAAGGACAACAAATAGAGTACGACACTGTTGTATGTTGCCAacgtaaaaagaaaatattagaaGATGATGCCCTCATTGCAGGGTGGAAAAAGGATTTAACTTGCGAAATATGTAAAGAATCTTTCTCCTATTACTCCCTGATGCGTGCTCATTTCTACCACAAACATCCAGGagaaaaatgttatattttatgCTGCCATCGCAAGATATCTCGAATTTCTGATGCATTAGAGCACATACGTTCCCATTTGGACCCCCAAGCATATCGatgtaaaatatgtaacatAACATTTTCTGGCAAAAGCACTTTGGCAAAACATATGCGCAATGTGCACATGGATTCCATACCGAAACATAAATGGGCCTGTAATAAATGTGATAAGACTTTCGAAATACGTCAAATTTTAACAAGACATCAAAATGTTTACCATTCTCAATAG
- Protein Sequence
- MASTTSCRLCSFTCEEFKCLYDDNGQESAVYQIAVKYFNPSLLNSGTDTTLRVICLECWQHISDFHSFHQWILNAQAQQEDMELIVHEEKSDEQISTFDVIEFDLIDDTSTSKSSHSTKSISSPINSIESEDENYNDSITKLRRKLECYKCKDIFESFANLDAHFQQFHPIDQFYVICCNEKFYQRWNLFEHFLGFHKQKDVNPFKCEQCGASFSQYGNLRRHVRRKHTVQPLLKWICKYCNKMFKNRSNLERHKNKIHTSQLNNDLQHENKIDEEEYLDSFEIDYEPEEDIQVDAVYETNDISNLNKYESILNAFPLESSEVNKDLQSLKQVSYSNDIYIKEESDIEFDITSSSTDINATKQIHMPALDIVDIKNENSTDTESEGDTKKFKKNVKTNEFNSDLEKGYDDFIDKWKGDLECPKCNKHVISYQQLSEHFALEHPEERCYINCCHITLYERTSIVEHLRFHENPNAFECSDCGKCFKNSKGLGSHKLQVHSDNRSAYHLHLCYCKRAKELHAENKAKGQQIEYDTVVCCQRKKKILEDDALIAGWKKDLTCEICKESFSYYSLMRAHFYHKHPGEKCYILCCHRKISRISDALEHIRSHLDPQAYRCKICNITFSGKSTLAKHMRNVHMDSIPKHKWACNKCDKTFEIRQILTRHQNVYHSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00260165;
- 90% Identity
- iTF_00259238;
- 80% Identity
- iTF_00259238;