Cvic016175.1
Basic Information
- Insect
- Calliphora vicina
- Gene Symbol
- ttk
- Assembly
- GCA_958450345.1
- Location
- OY288234.1:27919669-27928663[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-19 8.8e-16 58.3 0.0 2 45 583 627 582 627 0.97 2 2 5.1 1.4e+04 -3.2 0.7 3 11 660 668 660 671 0.82
Sequence Information
- Coding Sequence
- ATGTCAGtgcaacaattttgtttacgcTGGAATAATCATCAGCCAAATTTCATTTCGGTCTGCTCGTCTCTACTACACAATGGTACATTGGTTGATGTTACACTGGCTGCTGAAGGCAGGCAATTGCAAGCtcacaaaattgttttatcagcATGCAGTTCATATTTTCAGACCCTCTTTACCACCAATCCCTGTCAACATCCGATCGTTATATTAAAAGACGTGCAATATGATGATCTTAAAACAATGGTCGATTTTATGTATTATGGAGAGGTGAATGTGTCGCAAGAGCAACTGCCGCACATACTGAAGACGGCAGAAATGCTTAAAATAAAAGGTCTCGCCGAAATGCCCACCGATcctgccaatttaaccaaatcTGATAGTAAATCATCAAATGATGCTACAGAGTTGGTGGGTAGCGGTGGCAATAATGGACAGTTAGGTGGTGGCGGCGGTGGTGGTAACAGTGGAGGCGGCAGCAGTGCAGGCGGTGGTAATAACAGTAGTGGTGGTTTGGGCAGTAGTAGTGGCGGTGGCAGTGTCAGCGATTCAATATGGGGTAGTACCGAATCACAAtttcaacagcagcaacaacaacagcaacaacaacatcaacagcatcatcaacagttacaacaacagcagcagcaacaacagcaacaccatcatcaacaacaacagcagcagcaacagttACACACCCAACTGCAAAATAGTCAAACACAAACctcacaacaacagcaacaacaacagcagcagcaacaacaacatcatcagcaaCAGCTACGACGTACACCGTCTCCATTAGGCGCTGGCGCCTCACCAGCTACCAGACGAAAACGTTTAAGAAAATCCTCAAATAATGGATCCGGTGAACGTACTAATTCCGAAGACCATAACACTTCTTTGGATGCAGCCACAGCAGGTGGCCTAACCTTGTCCCAAATGAGTCAAATGTCATTTGGTGGTGCAGCTATAAATAGTGCTCTCGGTGGTTTAGCCGCACACTCCTTGCACACAGCTAAATTACTTAAAGAAGCCTCTAATAATGATTTGGAAACAAATCCCCAAGATTCAGATAGTTTAGATGATACCCATGGACATGTACATATgcaaattaaACCCGAAGTTGATATGAGCGGAGTGCCACAGTCTATGCCATTGGATATATCGGGTGCCACAACGCCCTCTGAACATGATGCTCCAAATTCACAATCCGCACATTCAGGTTTACAATGGACGGTTGTTGAACCAAATTATTCACGCTTTTCGCTGTCATCCTGTCCCACCAATTTAATTGGCAATAACAACAATCAAAATACAAAtaccaacaataacaacagttCGAGTAGtgatcaacagcaacaacatcagcagcaCCGTCAACAGCAAGAAGCCGTTGCTAGTCAACAgcatcaacaacagcaacagcagcagcaacaacaacacttGCAGCAACTACAACAATATCAGCATCAACAAAACGCTGCTTATTCGCCACAAATCATAACGGTCAGTGGCTATACGAATGCAGCAGCCGCTGCTGTTGCGGCGGCTCAAAACCTGTCACCGCCCTCGCCCAACGACGGCAATATGGTGCAATCAGTATACAGCCAAGGACCAACGCCCACCCAATCACCGGTGGGAAATACCCCGGGCTCTGTAGGTGGTAACAACATGGCCGGCGGCAACTCAGCCAACAATGCCATCATAAAACGTAAGCGTTCGGTTAATCCACAAGGTGATGAAAATTTTATACGGGCCCTGGAGGCAGTGCGTTCGGGAGGTATAGGTTTCTGTAAAGCAGCACGACTGTATGGCGTTAATAACCGCACTTTATGGCTAGAGTACAAGAAGCGCGGTTATCCTGTGTCCAGGCCGAGTATAAAATCACGTGTGGTCAAACAAGAACCGAATCTCTCACCCTCCCCCACACCACCCGGCAATACCACAGACGATACCAATGAGAACTACGATCATATGGCAGCAGCAGTCGCTGCTGCACAAACGGCCGCCCTAAACATGCAAATACCACCGACTTCCGAAACACCCACACCATCACTAATGTGTACACCCCATCATGCTGGCACAGCCGCTGGTGCTACCACACATCCCACAATGGGTGTAATGAGTTTCTTGGATACCCGCCATATGGACTTCCCAGCCAGTCTGCATTCAATGTCGCGTCAACGTTACATTGATGCCGGAGCTGGCAGTGGAGCCGGTGCGGGCACCATCAATGTAAATCCGGCAACGGCAATGAATCTACAGAGTATTAATTTTAACTCGATATAG
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQTLFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSDSKSSNDATELVGSGGNNGQLGGGGGGGNSGGGSSAGGGNNSSGGLGSSSGGGSVSDSIWGSTESQFQQQQQQQQQQHQQHHQQLQQQQQQQQQHHHQQQQQQQQLHTQLQNSQTQTSQQQQQQQQQQQQHHQQQLRRTPSPLGAGASPATRRKRLRKSSNNGSGERTNSEDHNTSLDAATAGGLTLSQMSQMSFGGAAINSALGGLAAHSLHTAKLLKEASNNDLETNPQDSDSLDDTHGHVHMQIKPEVDMSGVPQSMPLDISGATTPSEHDAPNSQSAHSGLQWTVVEPNYSRFSLSSCPTNLIGNNNNQNTNTNNNNSSSSDQQQQHQQHRQQQEAVASQQHQQQQQQQQQQHLQQLQQYQHQQNAAYSPQIITVSGYTNAAAAAVAAAQNLSPPSPNDGNMVQSVYSQGPTPTQSPVGNTPGSVGGNNMAGGNSANNAIIKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKSRVVKQEPNLSPSPTPPGNTTDDTNENYDHMAAAVAAAQTAALNMQIPPTSETPTPSLMCTPHHAGTAAGATTHPTMGVMSFLDTRHMDFPASLHSMSRQRYIDAGAGSGAGAGTINVNPATAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01397556;
- 90% Identity
- iTF_01236810;
- 80% Identity
- iTF_00258985;