Cvic016180.1
Basic Information
- Insect
- Calliphora vicina
- Gene Symbol
- -
- Assembly
- GCA_958450345.1
- Location
- OY288234.1:27951432-27953294[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.2e-07 0.0023 18.6 0.0 8 39 400 431 398 435 0.87 2 4 3e-14 8.3e-11 42.4 0.0 5 44 451 490 448 491 0.93 3 4 0.015 41 4.9 0.0 27 38 520 531 516 537 0.88 4 4 3.3e-15 9e-12 45.5 0.0 4 41 559 596 559 598 0.92
Sequence Information
- Coding Sequence
- ATGAACAATTTAAAGTGGATGGGCCATTCGGCCACAATATTAGATATACACAAAAATCTACGAGCCGATTTGAAGAGTTGTGAAGTGACTTTGGTGGCTAAGGGACACTGTGTTAAGGCCCATCGTTTTGTTTTATCATCGTGTAGTGATTTACTACGTTGCCTTCTAACGGATGTGCCCATTGGCCAGGAATGTTGTGTAATGGTGCCCGATATAAAAGGCCATTTGTTGGACAATGTATTGGCGTTTATATATTTGGGAGAATGTTCCTTATCCTCCACAAATTTGTCCGAGTTTTTGGAAGCTATCAATATATTGGGCATTAAAAGTGCCATCAGTTTTGAGTGTAATACAAATGCTTTGCAGACAGCTCAAAATAGCAGTCAGAACAGCATCGCACTAGATAGTAGTAACACAATCATGGCAGCTGCAACTAGTTCATTGGCTAGTCGGCAAGTGACTGTGGGGAGTTCTACCGAAACCTTGCATCAAgaagaaataattgaaacacaaagtATAATGCATAGCGATGCtcataataacagcacaagtaCTGCAAATAGTACTGGCGCTACAAGAGAACTAGACTTTTTGGATGTGTATCATGAACCTCAACATAAAATTACCTATTCCATTGAACATGTTCCAGGGTCTACGGCTggtaatgaatttattttaaccGAAAACTCTGGCACTTTCACGCTAACACACAGTGGTAAATTGGAACCGTCTTCATCACCGGAAGAGTCCTCTAATATGGAAGTTACGGAAGATGAAGGCTGTGAATCCCACATAATAGAGGAATACAGTAGTGGCGATGAACCTTTAATCCATATAGGTGAAACTGCACAAGAACATCATAGTGTAACAGTTGTGCAGTCAACACCGCAACAACATCAGCCAcaacaacaaccaacaacaCCCCTTGTTACAACTGCAACCACTTCGATACtacaattaaaaccaaaaatgaaAAGTATCAAGCTAAAACATCAGCCATCTACTCAACAGATTATAGCCAAAATGGAACAACTTCCTGAAGATACAGCGCACGACGATCCCATATCGATTTTGCAAGCATCTAATGAAAGTTTTACGCTGCTCAAAGATGCCACCATGATGTCCCCAAGTAATAATAGTCACGACGAGTCCACAGATTTTTCAATGCACAACTCGAGCACATCGGCTGCCGATTTGGCCTATCAGGCAATGATCAATGAGGGCTTGTCTTTACCAAAAGCTGCCgttaaatttaatgtttccAAAGCAGAGCTCTGGCGTCGTGTGCGTAGTACGGGCGTTGAACAGCTCAACAAATCAATTAAGTTGGATCCTGACAAGATCGATGTAATAGAACTGGCCAGCAAGGCAGTCATAAATGAGGGCTTATCACTTCAAAAAGCCGCCATACGCTATGACATCTCGAAAACGGTGCTCTGGCGCAGGGTTCGAAAACATCCGCAATATATGAAGACAGCTCGAGAAAATCCAATTATATCAAAGGCATACGAACGTTTAAAATCTGGAGAATCTCTTAAGAGCATATCACAAGATCTAGATATACCCATGTCAACTTTGCATCGACATAAGGTGCGACTGTCGCAAACTGGTCAGCTGCCTGactttgtaacgtgcaaaaaacGCGACAGCATGTCCAAAGATGATCTTAAATTAAAACTTGCGAAAGCAGTGCATGCCTGCGTACATGAAGGTATGTCCCAAAATCATGCCgctaatttatttcaaatctcCAAAAGCACATTGTGGCGTCATCTGCAAAAACGTGTAGCCGAAGCTGAGGCAGCCGAGACTGAGTCTATGGGTGATGAGGATGAAATTAAGCAAGAAGTCATTCTTTCGTAA
- Protein Sequence
- MNNLKWMGHSATILDIHKNLRADLKSCEVTLVAKGHCVKAHRFVLSSCSDLLRCLLTDVPIGQECCVMVPDIKGHLLDNVLAFIYLGECSLSSTNLSEFLEAINILGIKSAISFECNTNALQTAQNSSQNSIALDSSNTIMAAATSSLASRQVTVGSSTETLHQEEIIETQSIMHSDAHNNSTSTANSTGATRELDFLDVYHEPQHKITYSIEHVPGSTAGNEFILTENSGTFTLTHSGKLEPSSSPEESSNMEVTEDEGCESHIIEEYSSGDEPLIHIGETAQEHHSVTVVQSTPQQHQPQQQPTTPLVTTATTSILQLKPKMKSIKLKHQPSTQQIIAKMEQLPEDTAHDDPISILQASNESFTLLKDATMMSPSNNSHDESTDFSMHNSSTSAADLAYQAMINEGLSLPKAAVKFNVSKAELWRRVRSTGVEQLNKSIKLDPDKIDVIELASKAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPIISKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKLKLAKAVHACVHEGMSQNHAANLFQISKSTLWRHLQKRVAEAEAAETESMGDEDEIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_00199788;
- 80% Identity
- iTF_00259019;