Csim007519.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- -
- Assembly
- GCA_951812925.1
- Location
- OX638368.1:23475494-23490981[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.07 8.4 8.3 0.3 1 21 1805 1825 1805 1828 0.89 2 8 0.00071 0.085 14.6 0.4 1 23 1833 1856 1833 1856 0.97 3 8 0.039 4.7 9.1 3.0 1 23 2034 2057 2034 2057 0.95 4 8 7e-05 0.0084 17.8 1.2 1 23 2065 2087 2065 2087 0.98 5 8 0.00014 0.016 16.8 0.3 1 23 2094 2117 2094 2117 0.97 6 8 0.00073 0.087 14.6 1.4 1 23 2126 2148 2126 2148 0.96 7 8 0.00037 0.044 15.5 2.7 3 23 2155 2175 2154 2175 0.98 8 8 0.003 0.36 12.6 2.6 1 23 2181 2203 2181 2203 0.99
Sequence Information
- Coding Sequence
- ATGCTCTTTAAAAATACCGGAAATCGGACTTCTAAACTTAGTCTGCGAATAAAACAAGATGATGGTTATCCACAACGTATCTGCCCTAAATGTACAGCACAATTCCTAATGATTGGTAAATTCCGCCGAAAATGCCTTAAAGTACAAATACGACTTCGCGCACTAAATGAAGAAAGGCGATTGGAAGAGGAACAACAATTATTGAAACGTCTTGATGATAAAGAAACCTTAGATATCCCACCAGTTCTAGATATTGGTAACGATTTAATAAATGACAACTATGGGCAGCCCTTAAGTGAAGTTGAGCTATTCGAAACAAATTGGAATGCAACCGAAACAACACAAAATGAATCATTAACAAATGAATTACTTGTAAATGATCCAGTTAAAGCCGTGCGTCATGATAATGACGATGTTGACGACGAGTTGAGGACAACTGATGCAGATAACATCACAATGGGTTGTCGCGTGCTGCATCATAACATAGATCTtgaagttaaagcaaatatcgATGAAGAATCACTATTAGATACGAATTCCTTATTTAAGACCAACATTGATAAACAAACGTTAGAAGATGGTAATGAAGCGCAATCTCAAGAAAAAGCACAAACGGATGATAACGTATCATTGGAAGATAATAAAATAGATACTAATTTAGCTAAGAACATTGATAATGAATTAAATGCCAgctattttgttgaaaatactTTGGATATGTTAGCTGCAAACCAAAGCAATGATTTTGCGCTGTCGGAAAGCGATAATAATCTCACCAAGAATGCCGTTGAAAtgatttcaattgaaaatttgagtaaaattgaCTTGGTACCAACAACATCAAGTGACGATATAGCAAACAATTTGATAATATTAGCCGAAAATGATAGTATTGAAACTAAATATGACCAAAAAGAAGACTACAACATGAAAAGCAATAACGACGAGAAAgctcaaaatgaaaatgtgttGGAAAACGCGCCAACTGTTGAAAAACGAAATCCAGAACAATTAGAAATAAGTAAAAACAAAGCCGCCACAAATGCTGCtgaaaatatattaataaaaggaaTAAAATCAGCACTACCGACGACATTAAATTTGAAACTAACTTCAGATGATTGTTGCTTGAAAACTATAGTTGACATGAGAAAAACCGAAAGAAGGCACTCCGATACCACATTTGTAACAAAAGCAGCACTCAAGGaatacgattcaaatttatgcaatttaaaaaagaatgaTCAGATTTCTGCATCGCATAAAAGTCTACAACTATCAGTGAAAGTGTCAAAGTCAACAACAGTTTGCTTTGAAAAGAAAAGTGAAGCTGCCACTGCTGATAACAACGAAGTTAATTTATCCGCTGAAAGAAATGACAAAGCATTGGGTGAAAATCCAAAACCAGCTTTGATAATACCGTATGCACAGAAGCGACGAAAGAAGTTCACATTTAAACAAATGCGTAAACCAACTGCAAATGATTCGGATGAGGTAATGGAAACAGAAAGCATGCAGGCTGAAAGCTATGCAACTAAAATTCGTGAATGTACTGTGCGACTTCGTAGACTTAAAGCTAAGAAACTGAATAATTTGCTGTACGATAGTACAAATGATGTTAGCTCAACTAATGTAATACCTCCTCAACGGAATGAATTAAGAAAGAGAAGAAGAATGTCCAATACTGATTTTAATAATGATGTTACAATCAAAACACAACAAGTTACAGAAACAGCAGAACTTAGTACTACGGTGCAGAAAATGGAAAGTATAAATACACCTAAAAATAGATTATCACCATGGAAAACTAAGGCAGAGATGAAAGCAACTATTGACAACGTAAATTTAAGGAGAGAATCATTGCGCCGTAAGAaagcaaaaactgaaaatgaaacTGACACAATGATGGCTACATCCGCTAAAGATAATGATGATGAAATAGTGGACCAAGCAAAAGTAGCAAATTTGGAGCAAATACCTAATGTAGATGTAGAGCAGCCAATGACTAGTCAAGAATCAGCTGataatgttaataaaaatatggaTAATGCTGCTGTGGTTTGTACTGAACAAAGTCAAGCCAAACAACAATTGAAACATTTCATACTACGTAGAAGGCGACACGTGAGTGTTCATGATGCAGAGGATGGtacaaatgtaaataaaattccAAAGGAAAAACTCGAAACTAACGTAGATACTATAGTTCAGTCAAACACATTGCCTCAAGACACTGAAAGCCAATTTATAAAGTCGACAGCAGTTTCAAAAAAACCGCACTCAAAATCTCCAAATTTACATAGAAAAAAAGCAATGCAAGTACAGCGATGGCGTTTAGGTTTACGAAGAGCAAAAACTGAGAGTGCGGTCAAAAATGAGGTTGTTGAAAAAACTAAAgtgaatgaaaaagttaatgtcgtcaaagatgaagaaaaagaagttgaTTGTTCTACAAGCAACCCTGAAGCAAAAGGTAAAACCGAGCCGTCGTTGCAATCACCCCAAAAAATTACGAAGCTATTGCAATCGCCTCAAAAAATAACTGAGCTACAAAAAGTTGTTGAGCAGGCCATCACAACCCAGGAGCATCAGATAAAATCATTAATGTTACGTACAAGAAATGCAGAAGAAACGTCGCGCAGACGCACTGGATTGCTAAGAACAATAAAACGTACAGACGATATTCCAGTTGAAgatgaaacaaagaaacaacttGCCGCCGTATTGGAAACCATAGATAGCAAAGAAGTCAAGTTTACAGAGAAAGAAAttatttgcaaagaaaaaaacagtaaCAATATATCAACCCAAGAAATTACAGAGCATTTGCCAATACCTCAGGTTACTGCTGAGCAGCTTATCATTGAGGAATTGAAAATGCCCCAAATACTATACAAAACTGTTGAAAAAGCAACATCAAGTACGGAAGCAGCTAAACATAAGAAAGTACAAGTTAATGACCTTATCGGAAGCACTGTAGAACATGAAATAACCCCAAATTTAATAGAAACTAATGCACTTATTATCAGAGTACCACTTACAGCATTAACAGTAGAATTTCAACGTTTACATTGTTTGGCGACAAACGTACAGCAGCTGCAGCATACTGTCGAAGCAAAAGCAACAACTGCCACTTCTTGTAATGCTAATGAAGCTGAAAATACTGCACATActttcataaaatcaaatttttgtgaGAGTGCTGCAGCGGCCGAATGCTCTGAAAACGCTGGAGCACTAACAACTGACATGTCAATGAGAGCAACAAATTCAAGCGACGAAAATGATGACATGCAAAATCCAAATGCTACTCTAGGTAGCCAAAATGAAAGCGATCTAAGTGAATGCTATGGATTTGCAAGCGATCATTCATTTGAAATCAACTCGGTGGGAAAAGATgatgaagaaaatgaaattgaaacagAAAATGTCATTCGTTTGGTGTCTACACAAATTACCGATTATATTAAtgattttcaaacaaattgCTTAAATAGCAACGATATTGATGATAAATCCAATACATTTCCATATGATGAAACAACAAGCGTTGTAAATACGTCTTCCGAAATAAAGGACGAGCAAAATTTAAACATGACACAAATTCAAGCCGTACGTGATATTAATACACACTTGTCTTCCAATGTAAGCGAAAACGATATGGAAAGCACGCTTAATggtattttaaatgaaatacaaGATCAACATATATTTTCTTCCAATACAACATTAGTAACCTTAGAATCTGAAGATTATCATAATCATTCCGCCTACTCTCCACTCTCTGATGAACCGTCTGAATTGCAAATAAATCGAAATGACTTTTTggtaaaaactatgaaaaatacTCTATGTGACTCAGCTGATTCAACAGGTCCAGTTGTTAATCCACGTCAAGTTGAAGGTAACACTGATGTTAATCATTCGTTAATAACAGACTCATCATATGAATCACATTTTTCTAAATTCGTTGAATGTTTCACAGAAGATAGCACACAATCAGAACTGATAGGTTTCCAAAATGACATACcctgttttgaaaatattgaaatgaacAGTAGTACACCACGGCAAAATCCGCTAACGCCAACACTGCAAATGAGCCAATCATCTACACCAACATTAGTAGCAACTCCATTACGCATAACAAACAGTGCATTACAAGGTGCAATACAGCACGGCAAAAATATagagctttcatttaaaaactcCGAAGGCAACGTGCAATACCTGGGGATCACAACAAATGAATGCGATATGAGTGATGCCATGGGACTTGTATGCTCCACAAGTAGTGGTGTACAATTGCATACGCCTACCGTAACTAATAGCTCGGGGCAAACGTTAAGTGCGACATTTGTCAATGAACAACAAGCGAATACAATTGCCAAGGAGTATGCTGTGGACAGTGCTACAATGCAGCTGTCACAGCTCTTTACAgagatgcagcagcagcaacaagtgAAAGTGAGTCAAACTCAAGAAGCAAATATCGCAAGTGGTTCCTCTCAGGATATGCGTGCAATATTTTTGTccgataagaaaaaacaaaccacTGTGTCACCACCACTTAGAAGCACACAAAACTCAGTGTTATCAAAATTTGTTGGTTCTCCCAAACGCCTTGTTTATTCAAAGGCAGCAGCAGAAGCTGTTGGTGGCGATAACGCAATGCTGCAGCAAACAAAAAAGAAGCTTCAGTTTATCACCTTTCCAAATGATGGCCAATCAACTAGCACCATTGCAGCGGCACCAGCGGAAACAGTTCAAACGCTTAACATTGGCAACACTTATGCCGAAATGTTACCAGATGTGCAATGGCAGCAGACGACCAATTCACAAGATCAACAGACTACATATTATATAAATACCGCCGATTTGCAACAACAATCGAATCTCATTTCAGCACTTGTTAGCGGTAATATTTCTTTGGTACCATCACAAATGTCGAAGACTAGTGGAGCGCCACaatcaacaacatcaataatTCATACACAACAAAAAGCAAATGAAACTGATAAACAATCTGTTGATGCTAATGAGAACTACATTGAAGGGATGCAGCAAAACCAATCGATAATGATTGTTTTGCCTCAACAATTATTCAAAGATTCAGCAACTGTAACTTCAGTTTCTGATTATAATTCCAGCCAGAATATGACGACTATCACTACATTTCCAGTATTAAATGCTACATCATCTCCTACACAATCGAATGCCGTCGTTAACACATCATCACCCGTCAACACACTTTCGTCTTCCGTCCCACCTTCATCCTCCCCCGCCAGTGCTGTGGAACAGATGCTATCATCGGTTAATCTAACTTGTCGTTTTTGTCATAAGCGCCCAAAATTTACCAATAATCTGGAATATAGCAATCACATTATAGCTGCACATCCCGCTGAAAATCCATACAATTGTCCATCGTGTCCGATGTTCTTTACACGTCGCGTTCAACGTCAGCAACATGTTGTGGAAGCGCACAGTGCACATCGTTTTCAATGTGCGCAATGTGGGCAAAGTTTTACTGTGCAGCGTGCATTAGATTTGCATTTGCAACGTTACCATGTACCAGATGCTCCACCGCAAAATTTACCAAAACCACGAAGGAAAAGACTGACGCGTGAACAAAAgttacaacagcagcagcaaatacTAGATGCTACACCGTCCTGTTCATCACACCAGCAGCAGCAAGTTCAAAAGTTACAAGCGGCACAATCACATTATATTAATCCTACATCAACGTGGCAGGATAACGCAAGTGCACAAGTTAATTTGGAGGATGTGCATTTACAAGTGACCGATGATGATATAACAATCAACGAAGCGGACAATGTTCggaccacaacaacaacacaaaatttgAATACACCACCACATCGCATACTCGGCTGTCCAGAGTGTGATGACTCATTTGATGAAACAACAGGCACAGAATCACATACACATCATGTACATTCACCACCAGCTACAATGCCATCACCAGAACAAACAGAGCCTGATTCAACATCAACAATGACGCTACGACAATTTCGTAAGCAGCGCTTATCCTCGAAATCTTTTGATGATACACCTGAACGTGTATTACTTAGCAGTCACAATTGCATGTTTTGCGAAGAGCGTTTCACCAATGAAATTGCACTTAGGAAACATCATCAAATGGCGCATAATAATCAACCTGCGCTACCATTTGTTTGCGCGATGTGCAAACGTGGTTTTCGCATGCGCACACAATTACAACGACACATGGATACACATGACAGCGAAGGGCGTCCATATGAATGTAATGTGTGTCGCGTGCGTTTTCCAAGGCCCTCACAATTGACTTTGCACAAATTGACGGTGCATTTCTTGAAGAAACCACAGAAATCACATACTTGCAATGTATGTGGCAGGCAATTTGCAACGGAGAACGCTTTAAAAACACATGCAAAATTTCACGGTGCGAAGCAAGTAGATTGTAGCAAGTgcgataaaaaatttatctttaaaaaagacTTTCGTAAGCATTGGCGCATTCACACCAGGGAACTATTTTACAAATGTGACATTTGCccgaaatcatttttgcattatACACGTCTTAGTGcGCACCTTAAAACACACATACTCCCTGGAGCTTACATCGAGGAGGATCCACCAGCACATCATATTAGGGAACAaaaaaaacagcagcagcagaagcagcaaGCTGCTGTTGAACAGTCGACAGCTGAAAAATTGAATAACTCAGATGTTGATAATCCTCAAATTAGGTCGTAA
- Protein Sequence
- MLFKNTGNRTSKLSLRIKQDDGYPQRICPKCTAQFLMIGKFRRKCLKVQIRLRALNEERRLEEEQQLLKRLDDKETLDIPPVLDIGNDLINDNYGQPLSEVELFETNWNATETTQNESLTNELLVNDPVKAVRHDNDDVDDELRTTDADNITMGCRVLHHNIDLEVKANIDEESLLDTNSLFKTNIDKQTLEDGNEAQSQEKAQTDDNVSLEDNKIDTNLAKNIDNELNASYFVENTLDMLAANQSNDFALSESDNNLTKNAVEMISIENLSKIDLVPTTSSDDIANNLIILAENDSIETKYDQKEDYNMKSNNDEKAQNENVLENAPTVEKRNPEQLEISKNKAATNAAENILIKGIKSALPTTLNLKLTSDDCCLKTIVDMRKTERRHSDTTFVTKAALKEYDSNLCNLKKNDQISASHKSLQLSVKVSKSTTVCFEKKSEAATADNNEVNLSAERNDKALGENPKPALIIPYAQKRRKKFTFKQMRKPTANDSDEVMETESMQAESYATKIRECTVRLRRLKAKKLNNLLYDSTNDVSSTNVIPPQRNELRKRRRMSNTDFNNDVTIKTQQVTETAELSTTVQKMESINTPKNRLSPWKTKAEMKATIDNVNLRRESLRRKKAKTENETDTMMATSAKDNDDEIVDQAKVANLEQIPNVDVEQPMTSQESADNVNKNMDNAAVVCTEQSQAKQQLKHFILRRRRHVSVHDAEDGTNVNKIPKEKLETNVDTIVQSNTLPQDTESQFIKSTAVSKKPHSKSPNLHRKKAMQVQRWRLGLRRAKTESAVKNEVVEKTKVNEKVNVVKDEEKEVDCSTSNPEAKGKTEPSLQSPQKITKLLQSPQKITELQKVVEQAITTQEHQIKSLMLRTRNAEETSRRRTGLLRTIKRTDDIPVEDETKKQLAAVLETIDSKEVKFTEKEIICKEKNSNNISTQEITEHLPIPQVTAEQLIIEELKMPQILYKTVEKATSSTEAAKHKKVQVNDLIGSTVEHEITPNLIETNALIIRVPLTALTVEFQRLHCLATNVQQLQHTVEAKATTATSCNANEAENTAHTFIKSNFCESAAAAECSENAGALTTDMSMRATNSSDENDDMQNPNATLGSQNESDLSECYGFASDHSFEINSVGKDDEENEIETENVIRLVSTQITDYINDFQTNCLNSNDIDDKSNTFPYDETTSVVNTSSEIKDEQNLNMTQIQAVRDINTHLSSNVSENDMESTLNGILNEIQDQHIFSSNTTLVTLESEDYHNHSAYSPLSDEPSELQINRNDFLVKTMKNTLCDSADSTGPVVNPRQVEGNTDVNHSLITDSSYESHFSKFVECFTEDSTQSELIGFQNDIPCFENIEMNSSTPRQNPLTPTLQMSQSSTPTLVATPLRITNSALQGAIQHGKNIELSFKNSEGNVQYLGITTNECDMSDAMGLVCSTSSGVQLHTPTVTNSSGQTLSATFVNEQQANTIAKEYAVDSATMQLSQLFTEMQQQQQVKVSQTQEANIASGSSQDMRAIFLSDKKKQTTVSPPLRSTQNSVLSKFVGSPKRLVYSKAAAEAVGGDNAMLQQTKKKLQFITFPNDGQSTSTIAAAPAETVQTLNIGNTYAEMLPDVQWQQTTNSQDQQTTYYINTADLQQQSNLISALVSGNISLVPSQMSKTSGAPQSTTSIIHTQQKANETDKQSVDANENYIEGMQQNQSIMIVLPQQLFKDSATVTSVSDYNSSQNMTTITTFPVLNATSSPTQSNAVVNTSSPVNTLSSSVPPSSSPASAVEQMLSSVNLTCRFCHKRPKFTNNLEYSNHIIAAHPAENPYNCPSCPMFFTRRVQRQQHVVEAHSAHRFQCAQCGQSFTVQRALDLHLQRYHVPDAPPQNLPKPRRKRLTREQKLQQQQQILDATPSCSSHQQQQVQKLQAAQSHYINPTSTWQDNASAQVNLEDVHLQVTDDDITINEADNVRTTTTTQNLNTPPHRILGCPECDDSFDETTGTESHTHHVHSPPATMPSPEQTEPDSTSTMTLRQFRKQRLSSKSFDDTPERVLLSSHNCMFCEERFTNEIALRKHHQMAHNNQPALPFVCAMCKRGFRMRTQLQRHMDTHDSEGRPYECNVCRVRFPRPSQLTLHKLTVHFLKKPQKSHTCNVCGRQFATENALKTHAKFHGAKQVDCSKCDKKFIFKKDFRKHWRIHTRELFYKCDICPKSFLHYTRLSAHLKTHILPGAYIEEDPPAHHIREQKKQQQQKQQAAVEQSTAEKLNNSDVDNPQIRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -