Basic Information

Insect: Calliopum simillimum
Gene Symbol: -
Assembly: GCA_951812925.1
Location: OX638371.1:92681305-92687790[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.9 5.8e+02 2.5 0.2 11 23 277 289 277 289 0.89

2 9 1.3e-05 0.0015 20.1 1.4 1 23 295 317 295 317 0.97

3 9 8.3e-05 0.01 17.5 1.2 1 23 322 344 322 344 0.99

4 9 0.0079 0.94 11.3 1.6 2 23 351 372 351 372 0.94

5 9 0.69 82 5.2 3.2 1 21 585 605 585 606 0.89

6 9 9.1e-05 0.011 17.4 2.0 1 23 612 634 612 634 0.98

7 9 5.5e-05 0.0066 18.1 1.3 1 23 640 662 640 662 0.98

8 9 0.00015 0.018 16.7 2.2 1 23 667 689 667 689 0.99

9 9 4.7e-06 0.00057 21.4 2.7 1 23 695 717 695 717 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.9	5.8e+02	2.5	0.2	11	23	277	289	277	289	0.89
2	9	1.3e-05	0.0015	20.1	1.4	1	23	295	317	295	317	0.97
3	9	8.3e-05	0.01	17.5	1.2	1	23	322	344	322	344	0.99
4	9	0.0079	0.94	11.3	1.6	2	23	351	372	351	372	0.94
5	9	0.69	82	5.2	3.2	1	21	585	605	585	606	0.89
6	9	9.1e-05	0.011	17.4	2.0	1	23	612	634	612	634	0.98
7	9	5.5e-05	0.0066	18.1	1.3	1	23	640	662	640	662	0.98
8	9	0.00015	0.018	16.7	2.2	1	23	667	689	667	689	0.99
9	9	4.7e-06	0.00057	21.4	2.7	1	23	695	717	695	717	0.97

Sequence Information

Coding Sequence: ATGCCGAGTACTTGTTCAATGTGCCGTTCAAATGCGTTGAAGGAGAATATTTCGTTATCTCGTGTTCCAATGGATGAAGGAAAACGTCGAAGGTGGGCCGAAAGCCGTGGCAGAGAATTGAAATTGTGGTTTCGAATTTGCCTCAAGCACTTCGAACCAGTTGATTTCATCAATCCTCCCGGCACTAAAAACTGCAAATTGATGCCAAatTTCAAACGCTGTTCAAAAGCTACACGTAGTAACGAAATGGAAGATTTAGCTCATACGCACGATAATTCAGTGAATACTGGTTCAACTGCTATAACTGATCCAATTATGCTTAAAGATGAAAtcgaaatatcaataaaagacTTGCAGTTTGATTATCATCATAAAAGAAAATGTGGTGAAATAGTACTAGATACTTATGATAGTACCTTTACATTGAATTGCTTCTTGTGTTCAACAATCTGCTTAGATTTAATAACATTCTCCGAACATGTTAAAAAACAACATGAAAGTTTACTTCAACAACGCATCAACATTGAAAACAAATTGGATGCTGTTGCGGAAGATATATACGAATCAAATAACTCAAATTTGAGATTCAAAAATTCATCTGAGAGTAATAACGATAGTTTTCTTCAACAGTGCATCAAGATCGAAAACAAATTGGATGATGCTGCGGAGAAAATCTTTGAAGCAAATACCTCAAACTTTAGACTGACAAATGCAGCAGAAAGTGACAACGATAGTTTTCTTCAACAGTGTATCAACATTGAAAACAAATTGGATGATGTTGCAGTAGAAATCTTCgaagaaaataattcaaatttaagGTGCGCAAATTCAACAGAAAGTAGTCTGAAGGAACATATGACTATACATTCTAATGACCGTCCATTCGCTTGTACTATTTGCACCAAAGCATTCAGAACTAAGAGATTTCTGGCGGCGCATACTCGTCGACATGAAGTTAAACCATTTCAGTGCGATTTTTGTCAACGTGGCTACCGCAACGCCAATTTGCTGCGTGTACATCAAAAATCTCATCTGGGAATACGGGACAACGTCTGTCATGTTTGTGGGAAAGCATTTACAAGTACTAAAATTTTGTTCTACCATCGCTTAAGTCATTTCCAAGAAAACAACCGTACATGCAACAATTGCGGAAAAGAATTAAAAGCAGGAAATGAAGGAAGACGTCAAAGTTGGGTCGAGAGCAGTGGAGtggattttaaagttaattccCGCGTTTGCCAAAAACATTTCGatgaaaaagatattttgaatGAAGGTATCAATGGTAAAAATTGGCGTCGACTGAAGCCCAGTGCGTTACCGAGATCTGAGGAAATCCATTCAATAGCTAGCAAGGATAATTCAAAACAAGGCATTTCTGAAGATGAAGAATTTGAAATATCAATACAAGACTTGCAGTTTGATGATCATCATAAAAGAAAATGTGGCGAAATAGTGCTAGATAGCTATGATAACACCTTTACCTTGAATTGTTCCTTATGTTCATTAATCTACTTGGATTTAGTAACTTTCTCCGAACATGTAAGAAAACTCCACACTAGTTTATTTCCACAGTGCATCAATATAGAACATGAACTGGACGGTGAAGAAGAAATCTTTGAAGATGATACCACAAATGTTGAAAGCAACTACGATTCATCAGATAATAAACCCGGAAACTTCAAACCGTTTAATAGTTACTATCCAAGCATATATAAAGCATTAGAATTTCTACGTGGGAACGTTGCACCCTTTTGCTGTGACACTTGCAACAAAGTCTTCTATGTTGAGAATAAATATTTGCTACACAAACGTTTCTGTGGTGTTGTTGTCCATGAATGTAAGCAATGCTTAATGCGTTTTCCAAACTCAACAAATCTCAATATTCATATGTCCACACATTCTAATGAACGACCATTTTCTTGCACTATTTGCGGCTTAACCTTCAGAGCTAACATCTTACTTAACAGACATATTCATCGACACAAGGCTAAAGCATTTAAATGCGATGTATGTCTACGCACTTACCGATACGCTTATTTATTGCGAACACATCAAAAATCGCATTTAGGGATACGCGATTATGTTTGTCACGTTTGCGGAAAAACATTTACGAGTTCGAAATATTTGTATAATCATCGCTTAGgtcatttcaaagaaaacaatcGTAAATGTAACAACTGCGGTAAGGAACTCAAAGCATGTAGTATgccaacacacaaaaaaaattgcatgaatcgcgtattgaaaaaagtttcaacGAAAAAACCAGCTAAACCCTCGGAGAGAAAAGACAAGCAAGATTGTGAAGCGAAACAACGTTTGCTAAAGCAGATAAAAAATGTGCCTCATTGA
Protein Sequence: MPSTCSMCRSNALKENISLSRVPMDEGKRRRWAESRGRELKLWFRICLKHFEPVDFINPPGTKNCKLMPNFKRCSKATRSNEMEDLAHTHDNSVNTGSTAITDPIMLKDEIEISIKDLQFDYHHKRKCGEIVLDTYDSTFTLNCFLCSTICLDLITFSEHVKKQHESLLQQRINIENKLDAVAEDIYESNNSNLRFKNSSESNNDSFLQQCIKIENKLDDAAEKIFEANTSNFRLTNAAESDNDSFLQQCINIENKLDDVAVEIFEENNSNLRCANSTESSLKEHMTIHSNDRPFACTICTKAFRTKRFLAAHTRRHEVKPFQCDFCQRGYRNANLLRVHQKSHLGIRDNVCHVCGKAFTSTKILFYHRLSHFQENNRTCNNCGKELKAGNEGRRQSWVESSGVDFKVNSRVCQKHFDEKDILNEGINGKNWRRLKPSALPRSEEIHSIASKDNSKQGISEDEEFEISIQDLQFDDHHKRKCGEIVLDSYDNTFTLNCSLCSLIYLDLVTFSEHVRKLHTSLFPQCINIEHELDGEEEIFEDDTTNVESNYDSSDNKPGNFKPFNSYYPSIYKALEFLRGNVAPFCCDTCNKVFYVENKYLLHKRFCGVVVHECKQCLMRFPNSTNLNIHMSTHSNERPFSCTICGLTFRANILLNRHIHRHKAKAFKCDVCLRTYRYAYLLRTHQKSHLGIRDYVCHVCGKTFTSSKYLYNHRLGHFKENNRKCNNCGKELKACSMPTHKKNCMNRVLKKVSTKKPAKPSERKDKQDCEAKQRLLKQIKNVPH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00257891;
90% Identity: iTF_00257891;
80% Identity: iTF_00257891;