Csim026748.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- grau
- Assembly
- GCA_951812925.1
- Location
- OX638370.1:108516634-108519894[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.8 2.2e+02 3.8 0.1 3 23 309 330 308 330 0.93 2 10 0.14 17 7.3 0.2 6 23 339 356 339 356 0.98 3 10 0.00062 0.075 14.8 2.5 1 23 362 385 362 385 0.96 4 10 4.7e-06 0.00057 21.4 0.5 1 23 393 415 393 415 0.98 5 10 6.3e-05 0.0076 17.9 0.3 1 23 420 443 420 443 0.94 6 10 0.031 3.8 9.4 0.3 2 23 450 471 449 471 0.95 7 10 2.6 3.1e+02 3.4 4.8 2 23 480 501 479 501 0.89 8 10 0.013 1.5 10.6 1.3 1 23 508 531 508 531 0.91 9 10 8.4e-07 0.0001 23.8 0.7 1 23 537 559 537 559 0.99 10 10 6e-05 0.0071 18.0 4.2 1 23 565 588 565 588 0.97
Sequence Information
- Coding Sequence
- ATGATTTGTCGCCTGTGCTTAAAGGATTGCACAGAAGTGATACaaatttttgatgttgttgGAATAGAGTTGAACGTTGCATGTGTGATAGAAAAATACTTTTGGTTTCAGCCAAAAAATGATGATCCAATCTCTACCTCGGTATGCAATTCATGTTGGGTTAAAGTTTCCGACTTCCATGAATTCTATATGACTGTGGAAGAGGCGCATCGTCTGCTCGCTGAACGTTTTTCCATTAAAAGGGAAGTGAAAGTGCAACAACAGGACAGTGAGACATTCGAAGAAGACTCAAAAACCCAATGGTTGATGACAcgagaaaatgttaaaaataatgaTATTGTCGCTGAGCCCGACAGTAATGATGACGAAATGGGCATGCAGTTAAGTGTTCTACTGAGCGATGATGGAAATGTTGATGGAAGCGAGAATGACActgaagaagaaaagaaaatccCATTAAGTACGGAAGTTACTGACGAATTGGATGCCGGTACTGATATCGATGAAATATCTTTAGATGAACAATATTTTGTAGAAGAGATACTCAATAAAGCGCATCCTTTGAGCGATGAAAATGACGATTTATTTGTCAAAGAAGAACCATTTGATAAAAGTGATTTACGACGTTCCACGAGACgcataaaaaccaaaaagattGCTACAGAAAAATCAACCGACAGTCGCAGCAATGCACGACAAAAAACTTATGTATATAGTTTGAACTCCAGTGAAAATTACGATGCTGATTCGAAAAAAGTACAACTTCTGGCGGCTCAAACGAAACGTAGAGGACGACCGCGCAAGTCAGATGTCGAGAATAAGCAACACACAACTGCAAGAAAATCAGTGAGTGAAACGCGAATAGCTATGGAACGTAAATCACAagaatttgatgaaaaaattgcTGGCTATATGCGGCTACTCTGTCAAATATGCTCTGAGGAATTACCCACATTCGCCAAATTACGCATTCACTTTGCTCGTGAGCATCAAAAACCAGCGTATGTTATTTGCTGTAATAAGAAATTCTACAAACGTGTTTTGCTTGTTGAACATATTGACAAGCACCTGGATCCCGAGTGCTATAAaTGTACTGCCTGTAACAAAGTATTTGCTGATAAACAGTGTGTGCGTAATCATATGTTGCTCAAACATCAGCCAGATGAAATGAAGACTTTTGAATGTGAACATTGtccgaaaaaatttgcaaagccCTATTTGTTGGAGCAACATTTGATAGTACACGCAGAACGTACACATATTTGTAATATGTGTGAGAAAAGATTCCCAAGTGCTCCTCAACTTACATCACACATTAAAGCAATACACTCGAATACATACGGTACAATGTGCCATATTTGTGCGAAAGTTATTCGTGGGCGAGCTGCTTTCGAAAGGCATCAATTAGAACATGCCGGCGTAAAATTACCTAAAGTACAATGTCAAAAATGTGGCTCTTGGCATAAGGACAAGTATTCGCTGCAGAAACATATACAACGCCATAATGAAGCTGGTGCCGTACATCAGTGCGATATCTGTAAAAAGATAGCCCCGAATCGTAGTGCGCTTATGGCTCATTGTCGATATGTACATGCCGCAGAGCGAACATATGAATGCAGTGTATgtaaaaaagctttcaaaaaaccgattaatttACGTGAACATATGACAACTCACACCGGTGAGGTGCTCTACTCTTGCCAATACTGCCCAAAAACATTTAATTCCAATGCAAATATGCATTCGCATCGCAAGAAAATGCATCCAATTGAATTCGAAGAACAGCGAAAATTAAGACGGGGTAAAAATGCTGACGATATAGCggaaaaatcaacaattatggaAGAAGATGTGCCGCAAACTATTGTGGCTAGCATAAAAGATGAGGATGCCGATAATATTAGCATAATATTAACAACAAGCTAG
- Protein Sequence
- MICRLCLKDCTEVIQIFDVVGIELNVACVIEKYFWFQPKNDDPISTSVCNSCWVKVSDFHEFYMTVEEAHRLLAERFSIKREVKVQQQDSETFEEDSKTQWLMTRENVKNNDIVAEPDSNDDEMGMQLSVLLSDDGNVDGSENDTEEEKKIPLSTEVTDELDAGTDIDEISLDEQYFVEEILNKAHPLSDENDDLFVKEEPFDKSDLRRSTRRIKTKKIATEKSTDSRSNARQKTYVYSLNSSENYDADSKKVQLLAAQTKRRGRPRKSDVENKQHTTARKSVSETRIAMERKSQEFDEKIAGYMRLLCQICSEELPTFAKLRIHFAREHQKPAYVICCNKKFYKRVLLVEHIDKHLDPECYKCTACNKVFADKQCVRNHMLLKHQPDEMKTFECEHCPKKFAKPYLLEQHLIVHAERTHICNMCEKRFPSAPQLTSHIKAIHSNTYGTMCHICAKVIRGRAAFERHQLEHAGVKLPKVQCQKCGSWHKDKYSLQKHIQRHNEAGAVHQCDICKKIAPNRSALMAHCRYVHAAERTYECSVCKKAFKKPINLREHMTTHTGEVLYSCQYCPKTFNSNANMHSHRKKMHPIEFEEQRKLRRGKNADDIAEKSTIMEEDVPQTIVASIKDEDADNISIILTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -