Basic Information

Insect: Calliopum simillimum
Gene Symbol: -
Assembly: GCA_951812925.1
Location: OX638371.1:117248773-117251003[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0011 0.14 13.9 1.4 1 23 288 310 288 310 0.99

2 9 0.0007 0.084 14.6 4.3 1 23 316 340 316 340 0.97

3 9 5e-05 0.006 18.2 1.4 1 23 347 372 347 372 0.97

4 9 0.00099 0.12 14.1 0.4 1 23 381 403 381 403 0.95

5 9 2.2e-05 0.0026 19.3 0.6 1 23 411 435 411 435 0.91

6 9 0.00046 0.055 15.2 0.5 1 23 441 463 441 463 0.98

7 9 0.0033 0.4 12.5 2.0 2 23 470 492 469 492 0.96

8 9 0.016 2 10.3 1.2 1 23 498 520 498 520 0.97

9 9 1.9e-06 0.00023 22.6 0.2 2 23 527 548 526 548 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0011	0.14	13.9	1.4	1	23	288	310	288	310	0.99
2	9	0.0007	0.084	14.6	4.3	1	23	316	340	316	340	0.97
3	9	5e-05	0.006	18.2	1.4	1	23	347	372	347	372	0.97
4	9	0.00099	0.12	14.1	0.4	1	23	381	403	381	403	0.95
5	9	2.2e-05	0.0026	19.3	0.6	1	23	411	435	411	435	0.91
6	9	0.00046	0.055	15.2	0.5	1	23	441	463	441	463	0.98
7	9	0.0033	0.4	12.5	2.0	2	23	470	492	469	492	0.96
8	9	0.016	2	10.3	1.2	1	23	498	520	498	520	0.97
9	9	1.9e-06	0.00023	22.6	0.2	2	23	527	548	526	548	0.97

Sequence Information

Coding Sequence: ATGGACAAGTATGAAGACAAATCTACCGATATGCACATGCTTTGCCGCACATGCCTTCAGTTTTTAGCGGATGAGGCCCTTTGTTTGAAACATGACATTTTCCTCACCAAagatttggccaaaaaattaataatttgtaCTTCGTTAACAGTGGAGCTGCAGgATGGCTTTCCAAAATACCTGTGTGACTGTTGCTACAAAAAAGTGAACGAATTCCACAAATTTCAAACTAAATGTGTAGAGTCCGTGCAGCGATTTCGTGATATGCAAAGACAACAAGAAGCGCAACGCTATTCCTTTGAAGATGAAAAGCCCGAGTTTGATTTGGATGAACAGGGCAAATTAGAAATTACAATAACCGAACCAGaaatacattttcaaaattacagCACATTCCCATCGGACATTAGAGGTGatggaaatttaaatgaaagacAGGACCTGACAAATGTACGAATTAGGCTTCGAGGAAGAGGACAAAGCTCGACAAAAGGTACAATGTTGGCGGCGCTAAATAAAGAACCAGAAGATAATGTGTGTAGTCTAGGCAAACAAATGCGTAATACTAGAAGTCAAACatgtaaattaaaaacgaaaattgctgtacctaaggaaaaactgcttaaaatGGAGGAAATGAATAATTCGAGTAGCTGTTCTTATACTGCTAGTGAGGCAGAGTCGCAAAATAATGGTGATGATTGGGAAGCTGCAAACGGAGCTGAAAGTGATAACGTGGCGGAGAAGGCTGAAcatgcaaaagcaaaaacgcATGAAAGTACCAGAAATCAACGCAATAATAATCGAAAATACTATAAACCCAATGTTGATGAATCTAAATCATCTAAGAAGCCTCAGGTTTATCAATGCGATATCTGTCCCACAAGATTTTTTGTTGAACATCGCCTGATAGCTCATAAGCGCAGTCATGACGGATTGATGCCTTATTCCTGCAGTTTTAAAGGTTGTGGAAAGGGTTTTAATCGTTGGCACTGCCTTTCAGAGCACCTTAAACAACATGACGGTACCAACCAGTGGTACACCTGCGAAGAAGAAGGTTGTGGCAAAGTTTATAAACACAAACCAACATTATCCATGCATCTtcgtaaatttcataaaaaaggaCCGGAGTTGAAATCGCATGTCTGTGAAATCTGTGGCAAGGTCTTTAAGGCGTCTGCTATTTTAAATGACCATCGTTATACACATAAAGATAAATCCGAACTGCCATTTGCATGTGCCGAGGAGAATTGTGATCGTCGTTTCTCAAGCAAAGAAAAGCTTAAAGTACATATGATGCGCCATGCAGGAATAAAGAATTATGTCTGTCCATATTGCGGCATGCGTAAGACAACACGTAATGAgctaaaaatacatattaactACCACACATTAGAGCGAACGTGGCCATGTCGCTTTTGTCAACATGTGTGTAATAGCGCCGGCAATTTAAAAATGCACGTTCGAACGGTGCACGAGCGGGCAAAAGATTATGCATGTCGCTTCTGTGAGCGAACATTTGCTAAGCCAGATACACGAAAATATCATGAAATGACACATACTGGCGAGAAACCTAGTGAATGTGCAGAGTGTGGAAAGCGTTTTACTCAACCAGCAGCTTTACGCACACATCGTAAGATTCATTTGCGGCATCGAGTGCAGGAGACCGGGAATAGTAGTAGCGTTTCATTAGAAATAAGCACAGCTGATTGTATATTAAATAATGCAGTGGAAAATGTAACGCCCCAAGTAACAGTCTCGTCGCAGCCCTCGCTACCACCATATAAAATgcaaagttttttacaaaattcataa
Protein Sequence: MDKYEDKSTDMHMLCRTCLQFLADEALCLKHDIFLTKDLAKKLIICTSLTVELQDGFPKYLCDCCYKKVNEFHKFQTKCVESVQRFRDMQRQQEAQRYSFEDEKPEFDLDEQGKLEITITEPEIHFQNYSTFPSDIRGDGNLNERQDLTNVRIRLRGRGQSSTKGTMLAALNKEPEDNVCSLGKQMRNTRSQTCKLKTKIAVPKEKLLKMEEMNNSSSCSYTASEAESQNNGDDWEAANGAESDNVAEKAEHAKAKTHESTRNQRNNNRKYYKPNVDESKSSKKPQVYQCDICPTRFFVEHRLIAHKRSHDGLMPYSCSFKGCGKGFNRWHCLSEHLKQHDGTNQWYTCEEEGCGKVYKHKPTLSMHLRKFHKKGPELKSHVCEICGKVFKASAILNDHRYTHKDKSELPFACAEENCDRRFSSKEKLKVHMMRHAGIKNYVCPYCGMRKTTRNELKIHINYHTLERTWPCRFCQHVCNSAGNLKMHVRTVHERAKDYACRFCERTFAKPDTRKYHEMTHTGEKPSECAECGKRFTQPAALRTHRKIHLRHRVQETGNSSSVSLEISTADCILNNAVENVTPQVTVSSQPSLPPYKMQSFLQNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -