Basic Information

Insect: Calliopum simillimum
Gene Symbol: -
Assembly: GCA_951812925.1
Location: OX638368.1:41860433-41866993[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.21 26 6.8 1.5 2 20 313 331 312 335 0.94

2 12 0.0011 0.13 14.0 2.8 1 23 341 363 341 363 0.98

3 12 0.0012 0.14 13.9 4.2 2 23 370 392 369 392 0.95

4 12 0.003 0.36 12.6 10.6 1 23 426 448 426 448 0.98

5 12 8.4e-05 0.01 17.5 1.9 1 23 454 476 454 476 0.98

6 12 2.9e-07 3.5e-05 25.2 2.8 1 23 482 504 482 504 0.99

7 12 1.3e-05 0.0016 20.0 2.1 1 23 510 532 510 532 0.98

8 12 0.00014 0.017 16.8 1.9 1 23 538 561 538 561 0.96

9 12 0.021 2.5 10.0 0.9 2 23 573 595 572 595 0.94

10 12 3.6e-06 0.00043 21.8 1.3 1 23 601 623 601 623 0.97

11 12 0.0015 0.18 13.5 4.5 1 23 630 652 630 652 0.96

12 12 0.00045 0.053 15.2 1.7 1 23 658 680 658 680 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.21	26	6.8	1.5	2	20	313	331	312	335	0.94
2	12	0.0011	0.13	14.0	2.8	1	23	341	363	341	363	0.98
3	12	0.0012	0.14	13.9	4.2	2	23	370	392	369	392	0.95
4	12	0.003	0.36	12.6	10.6	1	23	426	448	426	448	0.98
5	12	8.4e-05	0.01	17.5	1.9	1	23	454	476	454	476	0.98
6	12	2.9e-07	3.5e-05	25.2	2.8	1	23	482	504	482	504	0.99
7	12	1.3e-05	0.0016	20.0	2.1	1	23	510	532	510	532	0.98
8	12	0.00014	0.017	16.8	1.9	1	23	538	561	538	561	0.96
9	12	0.021	2.5	10.0	0.9	2	23	573	595	572	595	0.94
10	12	3.6e-06	0.00043	21.8	1.3	1	23	601	623	601	623	0.97
11	12	0.0015	0.18	13.5	4.5	1	23	630	652	630	652	0.96
12	12	0.00045	0.053	15.2	1.7	1	23	658	680	658	680	0.99

Sequence Information

Coding Sequence: ATGGCACTGGACATTTGTTTAGATCGAAAATCATTTTTGGAGCAGATTTGTCGTAGTTGCAGTCGATATTACAGTTATGATGGTAACGAAGAAAAAATGGATTTCTTTAGAATATTCAATGATGAAAAGCCACAGCTTACGGATTGTAGCAAAAATGATGACGAATCAATTAATGTAAATGCTGGCGAAGTGTGTGGCGTCATTGGGCTCTGTGAagaaatcaaagaaattttccAGGAAATCATAATTTGGAATTTAAATATAAAACCCGGTGATGGTTTACCTCAGCAAATCTGTCGTGATTGCATGGAACGTTTTCGCAGTGTTAAAACCTTTCGTGAGGAATGTTTGGATACACAAAAAGTACTGGAATCGTATTTCAGAGATTTTAGCTTATTAACAAGTAAATCACCGAAAACAGAGTcggttaaaagtgaaaaaagtatTTCACCCACACCGCCATTTTTTAACCCCGACGATTTAGTAGAAGAGGTGCCAGAATCATCACCAGAGCACCGTCAGTCGCCAACTTCAAGTCCGAAACTTCAGCATAGCCCGAAATTTGCCGATGCCGTTTATGCAGAAAGTTCAATGGGTACGCCACCCCCAATTTTTGAGGAAATTAAAACCGAACCAATCGATGTACAAACTATGGAAAGCATTAAAGCTGAGGCTGATTTACAAATTGAAGTAAATACGACATGCGAAATTGAAGAAGAACATGAAAAGGCAGTGCTTATAAGCAATGGTCCcattttatcacaaaaagcAATGCGTTATTCCAGCAGTGATGACGAAGATGACGACGATGAATCAACAACGCCCACAACAGATGACGAATCCGACAATCTTACGTCATCCGCTGACGAATTTGAGTCAACGTACGAAGAAAATAGCAATCTCGTAGATCCACGTTATGATGCACGCAACCCGttgcaatgcaaaatttgttttgatatttttccgaAGCGATCCTTACTCAAGGAGCATCAGTTATGTGCACATCCAGAAGAAAAACCATATACTTGTAATCTTTGCCCAAGTACATTCAAAACGAATTTCACGCTCTCACAACATAAGCTCAAACACAATCGTCTCGATTCTATACGTTGCGAATTatgctcaaaatattttcgtaGTCAATTGCATCTCCAGCGTCACACTAAGAATTTTCATTTGACTTCAACTTATACATGTCACATTTGTCATGCTCAACTGGAGAAATATACACAGATTCGTTTTCAGTATCATGTACGACAGCATGGTGAAAAGCGCTTTCACTGTCACTTTTGTGATAAGTCATTTCATCAGAAAATTCATTTGGTAAATCATGAGCGTACCCATACCAAGGAGCAGCCATTTCGATGTGATATATGCGGAAAATCTTATCGCCAACAGACTGCTTGCCAAGAGCACATACTGACACATTCAGATCCAACCccttttaaatgtaaaatttgtgaaaaagGATTTACACAACGATCCAGCTTACGTTTGCATTATCGTACTCATAGCGGTAACAAACCATATCACTGCGATCTCTGCGGGCAGAATTTCGcacaaaaagtgcatttagaagTGCATCAACTTACGCATAAGGAACCGAATGCTTATCACTGCGAGATCTGCAATCAAAAGTTTCGTATTCTATCTCAACTGACAACACACATTAAACAGGCGCATACATCTTCAAGCGATGCTGTGGCAAAATGTTGTATTTGCGACCGCTGTAATGCACTCTTTCCCAGTCAGGCACATTTAGATGCACACATAAAGAATGTTCATTATACCAAGCGACAGCACAGTTgcgttttttgtggaaaaacatTTGCTTTGGCAGCAAATTTAAAGAGCCATATGAAAACACATGCTCAAACTTACAAGacttttaaatgcaaatattgtGATAAATGTTTTAAAAGTACTCAAGCACAACAGTTGCATGAGCAAATACATGTGGAGGATAAACAATTCAAATGTAGCTTTTGCGATCAATCATTTTTATATCGAGCTTCATTAGGTCAACACATGCGAACACATTTGAAAAGTCAAAGCGAAGAAGCAGAATCTATGGAATTTAATACATCAATTTAA
Protein Sequence: MALDICLDRKSFLEQICRSCSRYYSYDGNEEKMDFFRIFNDEKPQLTDCSKNDDESINVNAGEVCGVIGLCEEIKEIFQEIIIWNLNIKPGDGLPQQICRDCMERFRSVKTFREECLDTQKVLESYFRDFSLLTSKSPKTESVKSEKSISPTPPFFNPDDLVEEVPESSPEHRQSPTSSPKLQHSPKFADAVYAESSMGTPPPIFEEIKTEPIDVQTMESIKAEADLQIEVNTTCEIEEEHEKAVLISNGPILSQKAMRYSSSDDEDDDDESTTPTTDDESDNLTSSADEFESTYEENSNLVDPRYDARNPLQCKICFDIFPKRSLLKEHQLCAHPEEKPYTCNLCPSTFKTNFTLSQHKLKHNRLDSIRCELCSKYFRSQLHLQRHTKNFHLTSTYTCHICHAQLEKYTQIRFQYHVRQHGEKRFHCHFCDKSFHQKIHLVNHERTHTKEQPFRCDICGKSYRQQTACQEHILTHSDPTPFKCKICEKGFTQRSSLRLHYRTHSGNKPYHCDLCGQNFAQKVHLEVHQLTHKEPNAYHCEICNQKFRILSQLTTHIKQAHTSSSDAVAKCCICDRCNALFPSQAHLDAHIKNVHYTKRQHSCVFCGKTFALAANLKSHMKTHAQTYKTFKCKYCDKCFKSTQAQQLHEQIHVEDKQFKCSFCDQSFLYRASLGQHMRTHLKSQSEEAESMEFNTSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -