Csim025429.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- -
- Assembly
- GCA_951812925.1
- Location
- OX638370.1:78512326-78525251[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.34 40 6.2 1.4 2 23 179 201 178 201 0.95 2 17 0.25 30 6.6 0.5 3 23 265 286 264 286 0.92 3 17 0.12 14 7.6 0.2 2 23 293 314 292 314 0.92 4 17 0.00016 0.019 16.7 5.7 1 23 320 342 320 343 0.96 5 17 0.0017 0.2 13.4 2.9 2 23 350 371 349 371 0.97 6 17 0.34 41 6.2 0.0 2 20 381 399 381 401 0.94 7 17 0.00073 0.088 14.5 0.2 1 22 420 441 420 444 0.90 8 17 0.019 2.3 10.1 2.1 1 23 449 471 449 471 0.98 9 17 0.015 1.8 10.5 0.2 1 23 487 512 487 512 0.93 10 17 0.054 6.4 8.7 0.4 2 20 518 536 517 538 0.92 11 17 0.00097 0.12 14.2 1.7 1 23 545 568 545 568 0.96 12 17 0.0043 0.51 12.1 3.7 2 23 574 596 573 596 0.92 13 17 0.02 2.4 10.0 0.1 2 23 600 622 599 622 0.96 14 17 6.6e-05 0.0079 17.8 0.9 1 23 628 651 628 651 0.96 15 17 0.59 71 5.4 0.4 1 23 656 678 656 678 0.97 16 17 5.4e-05 0.0065 18.1 1.4 1 23 684 706 684 706 0.99 17 17 0.00011 0.013 17.1 1.8 1 23 712 735 712 735 0.97
Sequence Information
- Coding Sequence
- atGGCATCAAAATTGAAACTCAAGTGTTTGTACTGCAATAACAGTGACAATACggaattcattgaaatttttgatgaaactgGAGTAGATCTACAACTAGAGGGACTGCTACAGCAACACTTTCAACTAAGTGTGCCCTTTGTTCCAACAGAACAGCAAGTTTTATGTGAACCGTGTGTAAACaaattaattgaattgtttGACGAGTCAGAGCGACAAAGGGAGTTGCTTCAAACCGATGCCGATAATTCGGATGTAGAGCTTCCAGGAGTAGATGTATCCAACGAAAGTAACAAAGCCTTTTACGAGTCCTCAACGGAAACGGAAATTTCTACTAATGGATTGGAAGAAGCTTTTGAAACTTTAGGATCTGAAGAAGATCATGCTTCAAATGTAGAGGCTACAGAAAAAAAAGATGTTTTTATCCCTCAACCCTCTCTTGAATTGGATATTTTTGACGATGTTGATATACAAACCTATGCCGATTCCATAGTTAATAGTAATCTTGAAGAAATCCAACTAGAACGAAAAAGTCAATGCAgcgtatgcttggaaaaatttgaatatcatCAGGATATGTTTGATCACATAAAACTCCAACATGTAACTAAAAGCAAACATTTCCTTTGTACATTGGATAAATGTGAGGATTTACTTGAAAATGAAAGGATTTTAGCGAGACATATCATCCTAAGACACTACGATCTTCGCGGGTATTATACATGTGTATATATATTAAGTAGATTACGTTTCCATCTGCAATTTCATATGGCTCAGAGGCGTCCAAAAATTTGTCTTCTATGCGATAAATCTTACGGCAATGTAGAGCAATTTTTCGAACACGTACATTACGAACATGAGCCAGCAGATCGGCTGATATGTGCTAAATGCGACCGGATATTTAACAATAAAACTATTTATGAAACACATCTAGCAAATCATAATCGATCCAAAAAGTTCAAGTGCGATAATTGTTCCAAGTCATTTTCTTACAGATTTAAGCTGAAAAATCATTTGGAATCCCATCATAACCAAGAAGAACCCTTAAAATGTGAGATATgcagcaaaatttttctaagtaaaGTTAATTATCGCCATCACCTAAAAACTCACGAGTCATCTGTATTTGTACAAGTCAATGTTTGCACAGTATGTGGACTTATTGGAAGAGATAAAAATGAATTATTGGAACACCAAGGAGTAAATACTTCCAATTGCTTCGACGCACAAATTGAAGAAGAAATTCTCGTAGAAGTGTTTGTTTGCGAATATTGCGAACTGCCTTTTAAAATGCGTTCAGATCTAAGGATGCACCGTGCTTCAGGCATACATCTGGATAAAGTATATCACTGTCCATTCTGTTCAATTAACTTTAATGAGCTACGAAAGCTACGAGTTCATTTAAGCTCTCATAAAATAtatgaagaaagaaaaaactcgTTCCCATTAATGAGGCAATATATGTGTGATGCTGATGATTGCGAGTATTCAAGTACAACATGGATGTCGTTAAACAGCCACAGACTCGCGAAACACAAGCAACTACGACTGATATGCGAGAAATGCAGCGAACGATTCAATAAACGTGATGAATTTGATAAACACACGTCAGAATGTCAAAAGGCTGGAATGTATAGCTGTCaattttgtggaaaacaatGTCCAACAAAAATGTCACTTTCCGTGCATATTGCAAAGAGTCataacaaaaAAAACGTTAAATGCTCCACATGCAATGCCTGTTTTAAGGATGAGGAGTGCCTTCAAAAACACATTGAATTCGAACACGAAAAAGTGGAATGCAACCTATGCagcaaaataataaagaatggaCGTAATCTTTTGCTACATCAACGCATTGTACATTTCAATGACAAACGATTCTTTTGCGAAACTTGCAAGAAggggtttttcaataaaagcGATATGGAAGCTCAtataaaaatgGTACATCCAGCAACTAGTTACAAGTGCTCGGAATGTGCATTTGAAACTAACTACGAGAAGTCAATGGATATACACATGGCTCGACACaataacaactttaaattcaaatgcACAATCTGTTCAAAGGAGTTCACACGTGAAAGTGTTATGAACTTACATATAAAACGTCACCAGTCCAAACGAGAatttATGTGTAAACATTGTGATGTTTCGTTTGTGGCGCGATGGTTATTGAACAAACACATGCAAAGTAAGCATACACAGAACGTGAATAACACAAACTGTTCACCTAAGGGACTAAAGAAACTTAAACTTCAGGAAAAGTACAAGAATTCAGAAATAAATGAATCAATTGTGGCTGATAACCAAAGTTGTGATGACGCTAATAACGACGAAAATTTTGATACGTACATTGCTTATGATGATAGTTATATTATAAACTGTGATATGGATGAAGAAAGTAGCAAACACCATGCTGAAGATGTGACTTTGGAATTATCTTAA
- Protein Sequence
- MASKLKLKCLYCNNSDNTEFIEIFDETGVDLQLEGLLQQHFQLSVPFVPTEQQVLCEPCVNKLIELFDESERQRELLQTDADNSDVELPGVDVSNESNKAFYESSTETEISTNGLEEAFETLGSEEDHASNVEATEKKDVFIPQPSLELDIFDDVDIQTYADSIVNSNLEEIQLERKSQCSVCLEKFEYHQDMFDHIKLQHVTKSKHFLCTLDKCEDLLENERILARHIILRHYDLRGYYTCVYILSRLRFHLQFHMAQRRPKICLLCDKSYGNVEQFFEHVHYEHEPADRLICAKCDRIFNNKTIYETHLANHNRSKKFKCDNCSKSFSYRFKLKNHLESHHNQEEPLKCEICSKIFLSKVNYRHHLKTHESSVFVQVNVCTVCGLIGRDKNELLEHQGVNTSNCFDAQIEEEILVEVFVCEYCELPFKMRSDLRMHRASGIHLDKVYHCPFCSINFNELRKLRVHLSSHKIYEERKNSFPLMRQYMCDADDCEYSSTTWMSLNSHRLAKHKQLRLICEKCSERFNKRDEFDKHTSECQKAGMYSCQFCGKQCPTKMSLSVHIAKSHNKKNVKCSTCNACFKDEECLQKHIEFEHEKVECNLCSKIIKNGRNLLLHQRIVHFNDKRFFCETCKKGFFNKSDMEAHIKMVHPATSYKCSECAFETNYEKSMDIHMARHNNNFKFKCTICSKEFTRESVMNLHIKRHQSKREFMCKHCDVSFVARWLLNKHMQSKHTQNVNNTNCSPKGLKKLKLQEKYKNSEINESIVADNQSCDDANNDENFDTYIAYDDSYIINCDMDEESSKHHAEDVTLELS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -