Basic Information

Insect: Calliopum simillimum
Gene Symbol: -
Assembly: GCA_951812925.1
Location: OX638370.1:67127543-67149279[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00034 0.041 15.6 3.4 1 23 214 236 214 236 0.98

2 11 0.0021 0.26 13.1 9.5 1 23 242 264 242 264 0.96

3 11 0.00013 0.016 16.9 5.5 1 23 270 292 270 292 0.98

4 11 0.00029 0.034 15.8 0.9 1 23 298 320 298 320 0.95

5 11 3.6e-05 0.0044 18.6 0.5 1 23 326 348 326 348 0.97

6 11 3.2e-06 0.00039 22.0 0.1 1 23 354 376 354 376 0.98

7 11 0.00012 0.015 17.0 1.8 1 23 381 403 381 403 0.97

8 11 0.0023 0.28 13.0 0.1 1 23 409 432 409 432 0.91

9 11 0.0027 0.32 12.8 0.1 3 23 564 584 562 584 0.97

10 11 0.025 3 9.7 2.7 1 23 701 723 701 723 0.95

11 11 0.0073 0.88 11.4 4.9 5 23 736 754 728 754 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00034	0.041	15.6	3.4	1	23	214	236	214	236	0.98
2	11	0.0021	0.26	13.1	9.5	1	23	242	264	242	264	0.96
3	11	0.00013	0.016	16.9	5.5	1	23	270	292	270	292	0.98
4	11	0.00029	0.034	15.8	0.9	1	23	298	320	298	320	0.95
5	11	3.6e-05	0.0044	18.6	0.5	1	23	326	348	326	348	0.97
6	11	3.2e-06	0.00039	22.0	0.1	1	23	354	376	354	376	0.98
7	11	0.00012	0.015	17.0	1.8	1	23	381	403	381	403	0.97
8	11	0.0023	0.28	13.0	0.1	1	23	409	432	409	432	0.91
9	11	0.0027	0.32	12.8	0.1	3	23	564	584	562	584	0.97
10	11	0.025	3	9.7	2.7	1	23	701	723	701	723	0.95
11	11	0.0073	0.88	11.4	4.9	5	23	736	754	728	754	0.92

Sequence Information

Coding Sequence: ATGCCATACTTGCTGACAGATGCATCTCTTTCTATGCAAAAAGATGTTAAAGGAACACTAACAACAAACAAGGGAAGCGTTGTACGTCGAATGTTTGTAGTTAATGAACCATTTACAGGAGGCGGTCAACGagTAATAACAACTGGTGCTGCATCAACAGTGGtgaaaaaacaagaacaacaagtATTGAGCATCAATTGTGATAAGAATTactTGTTGGTAGATCAATCAGATCAGGCTCATTCCTTGGCCAATGGCATTGTTGATACGAAAACACAGACTATTCTGGCAACAGCTGGTAAAACGCATTTTAGTCCAATTGGACAGATACATTTAACTGCAGAAGAATGTAATGAAATTCTTATGAAGAGAGCTCTTGCTGCCTCACACCAAACGCATACGATTAGTACAACAGATGGACATGCCTCAACAAGCGATGGAATTTTGGGCGATATAATGCCCGGAATTTCTGTTcaggtacaaaaagttattcaggggTTAGACGACACAGAGGACTCACAAGAAGAAACGCCAAATATGAAATTGGAACCGGGAACATTGGACTTATCACCAAAAGCTGAATTACAGGATTCAATTAGTTTTAGCGATAATGATACAACAATTAAAAAGGAACGACCCTATAGTTGCGATGAATGTGGAAAATCTTTCTTGCTGAAGCATCATCTTACAACTCACGCACGTGTACACACAGGCGAACGTCCTCATGTTTGCGTACACTGCGGCAAGAGTTTTGCACATAAACATTGCTTAAATACCCATTTATTATTGCACTCTACGGATCGTCCCTATCAATGCGGGGAATGTAAAAAGAGCTTTACTTTAAAGCACCATCTGCTCACCCATTCACGTGTACACAGTCGTGATAGACCTTTTATTTGCCCGGAATGTGGTCGTGCGTTTCCACTAAAACGTCACCTTGTTACACATAGTAAATTTCATGCCGGCGAACGTCCATATGTCTGCGAAGAATGTGGCGAAAGTTTTGCTCAAGAGAACCATCTTATAATGCATTCAAGatTTCATGGTTCTGTAAATCCATTTGTATGCCCTGATTGCGGTGTTACTTTCCCAAGAAAATTTCAATTAGTAAACCATGGTCGTATTCATGGTAAAGTGCCACATTCCTGTACTGTATGTGGTAAGGAATTTTTACAGAAACGTACTCTTGTGTCTCATATgagAGTGCATACTGGCGATCATCCGTATCCATGTATTAGTTGTGGTGAAGGTTTTATGTCGAAAGCAGAACTTAATCAACATATCCGCGTCACCCACGGCGGCGTTAATCCAAACTCATCAAGCACAGCTATTGTACCGTCTAATACAATTATAACAACAAATCAACCAACGCAAACAATCCAGattcATCAAACACAACCACATCATACccagcaacatcagcaacaacaacagcagcaacaacaacagcaacaacagcagcagcagcaacaacagcaacaacagcaacaacaacaacaacagcagcagcaacaacaacaacaacaacaacaacagcagcagcagcagcaacaacaacaccaacatcaGCAACAAGTTCAAGCGCAAACACACCCACAAACGATTACAGTTGTAAGTAATCCAACAAATTCAGCGTTGCTTACAGTCACATCGAACGATAATAATCCTTTAGCAAGACCTCAATATGGATGTCGtgAATGTGGAAGTGCCTTTAATAGCAGAGAAGCCCTTGCGTTGCATTTACGACTTCACACTGGCGATAAGAGTCTAATGACTGACTTGTGTGCATTAACTGCAGCTTTGCCGGGACATTTTTTGAACACAGCATCATTAAATCAAGGAAATACAACGGTCGTTGCTGCAAATCCAAATATTGTTACACAAAATACTGTCCCGGTGCAAATAATTTCATCATCGGGACAAGTAGTTAGTCAAACAACAATGGTTCAAACTACTACTGCACCcccacaacagcaacaacaacaacaaccaccacaacagcagcagcaacaacatccgCAGCAACAGCAAACTGTACTATCTTCATTACCAACAGTTACGGTGCTACAGCAGCAACAAGTACCTCCTAAGCCAAAATCACACTTTTGCGCTAGTTGTGGCAAGGGATTTGCAGCAAAGCATGGTCTTATGCAACATAATCGTCGACATCCAAACGGCGGCTGTACTGTACGCACACATGTGTGCGAATGTGGAAAAGCGTTCTTccagaaaaatcatttaatgttACATCAACGCCAACATTTGGAAACCAAACCTGCTTTAGCACAGCAGCAGCAGGATGTTATACAACAGGCGGCACAACAGCAAGTACAACTAGCTCAACAGCAACAAaaccagcaacagcagcagcaacaacaaattacAACGCGAGAAGTTTTAATTGGTAACCAAGCGGTGCACGTTCAGGTGCTTCAAGGTACGAATACAGCGCAAGTTATCAAATATGAGATCAATATACCACAAGAAGGACAGGCTATTGAATAA
Protein Sequence: MPYLLTDASLSMQKDVKGTLTTNKGSVVRRMFVVNEPFTGGGQRVITTGAASTVVKKQEQQVLSINCDKNYLLVDQSDQAHSLANGIVDTKTQTILATAGKTHFSPIGQIHLTAEECNEILMKRALAASHQTHTISTTDGHASTSDGILGDIMPGISVQVQKVIQGLDDTEDSQEETPNMKLEPGTLDLSPKAELQDSISFSDNDTTIKKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCVHCGKSFAHKHCLNTHLLLHSTDRPYQCGECKKSFTLKHHLLTHSRVHSRDRPFICPECGRAFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSVNPFVCPDCGVTFPRKFQLVNHGRIHGKVPHSCTVCGKEFLQKRTLVSHMRVHTGDHPYPCISCGEGFMSKAELNQHIRVTHGGVNPNSSSTAIVPSNTIITTNQPTQTIQIHQTQPHHTQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQHQQQVQAQTHPQTITVVSNPTNSALLTVTSNDNNPLARPQYGCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLNTASLNQGNTTVVAANPNIVTQNTVPVQIISSSGQVVSQTTMVQTTTAPPQQQQQQQPPQQQQQQHPQQQQTVLSSLPTVTVLQQQQVPPKPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPALAQQQQDVIQQAAQQQVQLAQQQQNQQQQQQQQITTREVLIGNQAVHVQVLQGTNTAQVIKYEINIPQEGQAIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01378609;
90% Identity: iTF_01486531;
80% Identity: -