Basic Information

Insect: Calliopum simillimum
Gene Symbol: -
Assembly: GCA_951812925.1
Location: OX638372.1:53554100-53556883[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00019 0.023 16.4 4.1 3 23 256 276 255 276 0.99

2 10 4.9e-06 0.00059 21.4 2.7 1 23 284 306 284 306 0.98

3 10 1.6e-05 0.0019 19.8 6.7 1 23 314 336 314 336 0.99

4 10 0.02 2.4 10.0 0.9 2 23 342 363 341 363 0.96

5 10 8e-05 0.0096 17.6 1.4 1 23 371 393 371 393 0.98

6 10 0.00041 0.049 15.3 3.8 1 23 398 420 398 420 0.97

7 10 3.9e-08 4.6e-06 28.0 0.1 2 23 426 447 425 447 0.97

8 10 7.1e-06 0.00085 20.9 0.7 1 23 453 476 453 476 0.95

9 10 6.1e-07 7.3e-05 24.2 1.8 1 23 481 503 481 503 0.99

10 10 0.0011 0.14 13.9 0.3 2 23 509 531 508 531 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00019	0.023	16.4	4.1	3	23	256	276	255	276	0.99
2	10	4.9e-06	0.00059	21.4	2.7	1	23	284	306	284	306	0.98
3	10	1.6e-05	0.0019	19.8	6.7	1	23	314	336	314	336	0.99
4	10	0.02	2.4	10.0	0.9	2	23	342	363	341	363	0.96
5	10	8e-05	0.0096	17.6	1.4	1	23	371	393	371	393	0.98
6	10	0.00041	0.049	15.3	3.8	1	23	398	420	398	420	0.97
7	10	3.9e-08	4.6e-06	28.0	0.1	2	23	426	447	425	447	0.97
8	10	7.1e-06	0.00085	20.9	0.7	1	23	453	476	453	476	0.95
9	10	6.1e-07	7.3e-05	24.2	1.8	1	23	481	503	481	503	0.99
10	10	0.0011	0.14	13.9	0.3	2	23	509	531	508	531	0.92

Sequence Information

Coding Sequence: ATGGACCTTGTGTGTGGGGAACTTTATAAATGTCGGGCATGTCTTGTGGAAAACAACTCGCAATTGTGTTGGACTGCACCACTTAAAACGTCTAACAACGAAAGCATCACATATTTGGAATGTTTCCAAATGTGCACTCGGTTGCCCGTAAACTTGGATGATCAGCTGTCGCAGATGCTTTGCTTTAAATGTGCGGCGGAACTGTGCGATGCTTATGAATTCATACAGAAAGCAATCCAATCTCATCGAACGCTGCTGATGAAACAGGAGCCATCATTGTTCTCATTCATAAAAACCGACGAAGATGAAAAATCAGTTGTAAAAGCTGTTGAATTTGTGGCGGTGGAAAAAACAAATGATGATGAAATGTTGACCTCAGATGCTGACGCTAGAGTTAAGAAATCACCTGACGAATTGTCAATAGTAGCAGTAGAACTTACAATAGATGAAGACAgcgacatttttaaaaataatgagtTCTCATTTTTAGATAACCTCGATAACAACCTCGATACAACTATATCACTGGAAAAAGACGAAAAGTCTCGCAGTTTTGGTATTAGAGAAAAATCCGAACGCCGTGTTACAAAAACATTGCGCAGACTACCGGAATCGAGGAAAAATTCCTCAGATAGATCTGATTGCAGTTCAACGGAGGAAGATAGCGATTCTAGTTTTGTATCTGATGAAGAACCAgaacgaaaaaaatcaaataaaaaaacacaaaaggaAAAGCCGATATTGAATGAAAAGGAAAAGTTGCTCTGCCATTTATGCCcGCGTATTTTTAAAACTCGCCAGACTTTTAAAGATCATCAGAGAACGCATGAGATAAATCGAGAACGAAATTACAGTTGTGAACTCTGtggaaaatcgtttttttccaaaaagggACTGAGAAAACACTCTAAGACTCACGATGTTAATCGGTTGAAGCCCTTTAAATGTCAACAGTGtgataaatctttttttagtaaatgCAGCTTAAAGAACCATATGTCAACCCATACAGGCGATACGTTGGAatgcaaaatttgtaaaaaagtcTTACTAACTCCAACTTCATATCGTAATCATTATAATAGACATGATCTGAACCGAAAAGCTACATTCCAATGTGAACAGTGTGAAAAGTCATTTTTCTCTAAAAGAACTTTAGACGAACACTTGCAAATACATACAAATGGATTATTCAAATGTGATCAGTGTGATAAGCAATTTTTTCATAAGTACAGTTTAGATACACATTTAATTCTCCACACAGGAAAAACCATACCATGTGAAATTTGTGGAAAACCATTTGCGCGTAGTAGTGATTTAAAGGGTCACATGCGTACCCATTCAAACGAAACACCCTTTAAATGTCAATATTGCGATCGCGCTTTTTCTAGATTTGGTCTTCTCAATAAGCATGAATTAGTAGAGCATGAAGGCTTTCGGTACACGTGTAAAATTTGTAGCAAAGAATTTGTTAATCAGGATAGTTTGCGCAGACATAAACTAACACACACTGGAATAACAATGAAATGCTTAATATGTGGAAAAGGATTTAACCTAAAATTCAAaATGAAACGTCATATTGCTGGTGttcataaaattgaaatggaaaaaactgaagAATTAATACAAAAACTCAAGACAAAACGAGAATATCGAGGGCTTATAATAGATGAGACATAA
Protein Sequence: MDLVCGELYKCRACLVENNSQLCWTAPLKTSNNESITYLECFQMCTRLPVNLDDQLSQMLCFKCAAELCDAYEFIQKAIQSHRTLLMKQEPSLFSFIKTDEDEKSVVKAVEFVAVEKTNDDEMLTSDADARVKKSPDELSIVAVELTIDEDSDIFKNNEFSFLDNLDNNLDTTISLEKDEKSRSFGIREKSERRVTKTLRRLPESRKNSSDRSDCSSTEEDSDSSFVSDEEPERKKSNKKTQKEKPILNEKEKLLCHLCPRIFKTRQTFKDHQRTHEINRERNYSCELCGKSFFSKKGLRKHSKTHDVNRLKPFKCQQCDKSFFSKCSLKNHMSTHTGDTLECKICKKVLLTPTSYRNHYNRHDLNRKATFQCEQCEKSFFSKRTLDEHLQIHTNGLFKCDQCDKQFFHKYSLDTHLILHTGKTIPCEICGKPFARSSDLKGHMRTHSNETPFKCQYCDRAFSRFGLLNKHELVEHEGFRYTCKICSKEFVNQDSLRRHKLTHTGITMKCLICGKGFNLKFKMKRHIAGVHKIEMEKTEELIQKLKTKREYRGLIIDET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -