Csim021364.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- -
- Assembly
- GCA_951812925.1
- Location
- OX638370.1:4069274-4072959[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.2e-05 0.0086 17.7 0.2 1 23 355 378 355 378 0.94 2 12 0.001 0.13 14.1 3.4 1 23 386 408 386 408 0.98 3 12 8e-05 0.0095 17.6 2.7 1 23 415 437 415 437 0.98 4 12 0.00013 0.016 16.9 1.6 1 23 443 465 443 465 0.98 5 12 3.4e-05 0.0041 18.7 0.9 1 23 472 494 472 494 0.98 6 12 1.3e-05 0.0016 20.0 0.7 1 23 500 522 500 522 0.96 7 12 0.00014 0.016 16.8 0.2 1 23 528 550 528 550 0.97 8 12 3.1e-06 0.00037 22.0 1.2 1 23 556 579 556 579 0.97 9 12 0.00063 0.076 14.7 3.8 1 23 585 608 585 608 0.97 10 12 4.1e-05 0.0049 18.5 3.4 1 23 614 636 614 636 0.98 11 12 7.6e-05 0.0091 17.6 0.8 1 23 642 664 642 664 0.97 12 12 0.0015 0.18 13.5 0.4 1 22 670 691 670 694 0.92
Sequence Information
- Coding Sequence
- ATGGCGTCTGCGATGAACCTCCATTCAGAATACATCATCGAgaaaatgaaatgttttttgtgtgatCATGAATTTCAAGAGGGCGAAGAAACCTGGCTGATATTTGAACAGCGCGTACAAGAAGATGGCCAATTGGAGTGCCCACTCTCGGTAATTTTAGGGTCAGCATTGGGACGTGAGATGGATGAAAACACGGCACACTCTAAGATACTTTGCGATTCCTGTAATACAATCATGCTGGACTTTGAGAGCACTGAACAGAGATTCTATGAAATGCGTTATCGCATTCTTAGAGAGTACAATAAAATGGCAAAGCGCAATGAAATGGACACCATAGCAATCGAAGTTAATGGTGTATTACAAAATATCGAAGATGTTGAAACAGATACTCAACCACCGCTCATTGCTAATGATACTTTTCCAATAAACATGGAAACAATACAAGAGCCTCAAGTTCTTGTTATGCCTAAATTGGAAACTGAGGAAATAAGTAATGAAGCGCTTTCGATGGGCATAATTGAACAAGTGTCAGAAACAGGTATTGTGGAGCCAACTAAAACTGAGGAATCTGCTACAGTAACGGCAACAAATACTATCGTTTTCGGTCAAGAGGTTGCTATAATAGCAGGAGAATCTGTTCAAAATGAAgaatttatggaaaatatgattgatgtAGAAGATGTCGAGGAAATAGATCCGGATGCTATGTATTATGACATAATCGAACAAAGCTCTGAAATAAGCAGAGAAGACGAAGAAGCAAGCGTTGATAGCTCCTATATGGAAAACATACCAGATCGTCTGTACATTGATTCTGCAGATACGATATACGCCAGTGTTGTGAATGAAACTTGTGTTGGTGAGGAGGTTATTACTACTGCAACATCTACGCAACAAAAGCGTCAACTTACACGCGTACCACGTCAGCTGAAAGATACACATCCACCCATTTATGAACAAATCCAAGGTGGCGGCTACCTTTGCTTATTGTGCGCTGATAAACCACAATTCGATCCACCGGCATTTTCCGAACACATGCGCACAGAACATAATTATCGCTTTTATACGTGCGATTTATGTGGCAATGGATTTTCACGCCGTCAGGATCTCAACGATCACATGGATGAGCAACATGGTAGCAATGAACAGGGTTCCTTTGAATGTGAGACCTGCCATCgcatttttgcaaattataGACTATTTCGCATACACAAACGCATGCATTACACGAGTATGAAACAATTTGAATGCACTGAATGCCATCGTAAATACAGTTCCAAAAATCTACTTGATGAGCATATGAATATGCATACCGGACAGCGTCCATATAAATGCGCTCAATGTCCCAAGGATTTTGCATCAAAATATACATTACATTCACACGCCAAAATACACACGGAGCGGCAGCGCCCTTATCAATGTGATGTGTGCGATAAGGCTTTTTTAAATCAACAGAATTTGACCCAGCATCGGAAATTACACTCTGGCGTCAAATCATTTATTTGTGACGTTTGCTCAAAGGCTTTTAGTACGCAGCATAATTTGTTGGTACACAAAATTGTGCATACAGGTAACAAACCATTTATTTGTCGAACTTGTGGTAAAGCTTTTGCGCGGCGTGCCGAAATTAAAGATCACGAACGCATACATACCGGCGAACGTCCATTTAAATGTGATATTTGTAACATGGCCTTCGCGCAACGATCTAATTTAACATCCCATAAAAAATCGACGCATTTCAATGAGAAACAACATAAATGCGATCAATGCGAACGGTCTTTTAAGCGGCGTCGGCTGCTTGATTATCATATCCAATCGACTCACACGGGCGAGCGCCCACACAAATGTGAGATGTGCGGCTCTACATTTGTTTATCccgaacattttaaaaaacatatgcTCATTCATTTAGGCGTCAAACCATATTCGTGTGAGGTTTGTGGCAAACAATTCAACAGTCGCGATAATCGCAATGCCCACCGTTTTATACATAGCGATAAAAAGCCCTATGAATGTTTGGAATGTGGTGCAGGTTTTATGCGAAAACCGCTGCTATTGGCGCATATGAAGCATACGAAACATTCAAATGATACGATCATTGTAAATCAACCACAAATTGGTTTAAGTGATGATGCCCTCGTCTTGAATAATGTGGATGAAGACGACGATATGGTTGAAGAACTTGATTCATCATCAAATTCACAAGGAGAAATGGTAGCTGTAGCTGATGATGACGCCAACGATATGGTTGAATATATGATGCAGCGTGCTGACAGTATTTTACCATCAAATGATGAAGACGATAGCAACGATGACATCACTAGAGTAAGCGGACAACTAATAAAGGATGAAATTGGCGatgtaaaatatttacaatttgaGGAACTTGATGGCGATGGACATCAGACATTGACTTGGGTTGATATTGGCGATAAGAATAGTTAA
- Protein Sequence
- MASAMNLHSEYIIEKMKCFLCDHEFQEGEETWLIFEQRVQEDGQLECPLSVILGSALGREMDENTAHSKILCDSCNTIMLDFESTEQRFYEMRYRILREYNKMAKRNEMDTIAIEVNGVLQNIEDVETDTQPPLIANDTFPINMETIQEPQVLVMPKLETEEISNEALSMGIIEQVSETGIVEPTKTEESATVTATNTIVFGQEVAIIAGESVQNEEFMENMIDVEDVEEIDPDAMYYDIIEQSSEISREDEEASVDSSYMENIPDRLYIDSADTIYASVVNETCVGEEVITTATSTQQKRQLTRVPRQLKDTHPPIYEQIQGGGYLCLLCADKPQFDPPAFSEHMRTEHNYRFYTCDLCGNGFSRRQDLNDHMDEQHGSNEQGSFECETCHRIFANYRLFRIHKRMHYTSMKQFECTECHRKYSSKNLLDEHMNMHTGQRPYKCAQCPKDFASKYTLHSHAKIHTERQRPYQCDVCDKAFLNQQNLTQHRKLHSGVKSFICDVCSKAFSTQHNLLVHKIVHTGNKPFICRTCGKAFARRAEIKDHERIHTGERPFKCDICNMAFAQRSNLTSHKKSTHFNEKQHKCDQCERSFKRRRLLDYHIQSTHTGERPHKCEMCGSTFVYPEHFKKHMLIHLGVKPYSCEVCGKQFNSRDNRNAHRFIHSDKKPYECLECGAGFMRKPLLLAHMKHTKHSNDTIIVNQPQIGLSDDALVLNNVDEDDDMVEELDSSSNSQGEMVAVADDDANDMVEYMMQRADSILPSNDEDDSNDDITRVSGQLIKDEIGDVKYLQFEELDGDGHQTLTWVDIGDKNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -