Csim006512.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calliopum simillimum
Gene Symbol
-
Assembly
GCA_951812925.1
Location
OX638368.1:3401120-3415686[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.023 2.7 9.8 2.3 1 20 931 950 931 953 0.94
2 25 0.0037 0.44 12.3 4.8 1 23 959 981 959 982 0.95
3 25 0.02 2.4 10.0 0.8 2 23 1019 1040 1018 1040 0.96
4 25 0.033 4 9.3 0.5 1 23 1112 1135 1112 1135 0.95
5 25 0.00024 0.029 16.1 0.4 2 23 1213 1234 1212 1234 0.96
6 25 0.093 11 7.9 1.5 1 23 1241 1264 1241 1264 0.96
7 25 0.0041 0.5 12.2 0.1 2 20 1272 1290 1271 1293 0.92
8 25 0.047 5.6 8.9 3.7 1 23 1375 1398 1375 1398 0.97
9 25 0.4 48 5.9 2.6 1 20 1406 1425 1406 1426 0.95
10 25 0.098 12 7.8 0.3 2 23 1437 1459 1436 1459 0.93
11 25 0.011 1.3 10.9 2.0 2 21 1475 1494 1474 1496 0.93
12 25 2e-05 0.0023 19.5 5.1 1 23 1503 1525 1503 1525 0.99
13 25 3 3.6e+02 3.2 2.0 2 23 1565 1586 1564 1586 0.82
14 25 0.00021 0.025 16.3 3.9 1 23 1668 1691 1668 1691 0.95
15 25 0.00011 0.013 17.2 0.3 1 23 1704 1726 1704 1726 0.98
16 25 2.9e-05 0.0035 18.9 2.0 1 23 1733 1755 1733 1755 0.99
17 25 0.28 34 6.4 0.0 3 20 1783 1800 1781 1802 0.93
18 25 1.7 2.1e+02 3.9 0.6 1 23 1860 1883 1860 1883 0.96
19 25 2.5 3e+02 3.4 2.5 1 20 1920 1939 1920 1943 0.93
20 25 0.0015 0.17 13.6 4.5 1 23 1962 1985 1962 1985 0.98
21 25 0.00014 0.016 16.9 0.7 2 23 2017 2038 2016 2038 0.95
22 25 0.0017 0.21 13.4 3.0 1 23 2044 2066 2044 2066 0.99
23 25 4.7e-07 5.7e-05 24.6 3.4 1 23 2072 2094 2072 2094 0.98
24 25 8.2e-07 9.8e-05 23.8 1.9 1 23 2100 2122 2100 2122 0.99
25 25 0.0028 0.34 12.7 0.1 1 22 2128 2149 2128 2152 0.90

Sequence Information

Coding Sequence
ATGCAGCGAATTTTGAAACTGCCTACAAAACCAATTTCAGCTCAAGTATCCGGGCTCAATGGCGCTATAGGTTCCAATCCTACTATGATGTCTTCATTTTTCGTCGGTTTTCCTCAGTTCAAGGAAATTCCTGTTGAGGTAATGCCTCTTATTGTGCCCAGAGCTACAGAAAATTTACCTTCAAATTCTTTTGACATTTCTCAGTTTCCTGAAGTGCCAACATTTAAATTGCATCCTAAGAAAAACTCCAATAAGCCTGTTGTGCCTTCTAAGAGATTGCGTCTCGATGAAGCTGCTTCAGatgctgttgttgatgatgaagTTGTAATTGTTGAAACCAGTGGTGTAGCTTCTGCTGACAATTCGTCTGGCTTGGATGATCTTAAAATGGTCATAGAGGCTCAGTACAAAATAATGCCCCTCAAAAAAAAGAACTGCTCATCTACACTTGCCTCGTCTTATCGTTCTATCGCGTTGGCTTCGACCTTGCGGAAAATTTTTGAGCGTATTTTATGTGCCCGTTTGGAATGGTTTCTTGAGTCGCAGTCTAAAATAAGTAACAGTCAATCAGGTTTTAGGAAATGGAAGTCCACTGCCGATAATGTCATTACATTATGGTCTGCTGTGCAAttaacatttcttaaaaaagaGAGCATGGTAGCTGTCTTTCTTGATATCAAGGGAGCATTTGATAATGTGAATATAAAACTCCTGTGGGCTAGATTAAAACTATTAGGTGTTCCTAACAAGTTTTGCGATTTCATTTATTGTCTCTTTCAATTTAAAGATTTATACATTCAAAATGATGACGGGTATGTAAACAGGCACTCCTTTACGGGCGTGCCCCAAGGCTGTGTTCTTAGCCCTATATGCTTTAATTTGTATATAGATGAAGTTTTTAGTGACATCATAGATGACGTGCACGTCTTGGGATATGCTGATGACATCGTAATTTTTTGTTCTCATTCTGATGTGTCTCTGGCAAGGGCCAAGGTTCAAACTGCTCTCTCTGCCATTGTGGGTCGTCTTTCACAATTACAGTTGGAGTTGTCTATTTCAAAAACTAAGGCAATGATTTTTACTAAAAGGactaaaaatttgcataacaCTTTGCCCCTGCATATTGGCTCCAATGACATAGAATTTGTTGACACTTTTAACTTTCTTGGGTTCACTTTTCATAAGCATCTGCTGTTAAGGCACCATGTTGATCGGCTAGTGAAGAACTGCTTTCACTATATTAATGTTTTACGTTCTTTGTGTGGTGTATCTTGGGGCTCCGATCCTCATTGCATGATTCGTCTGTACATTGGATTGATAAGGCCTAAGCTGGAATATATGGCTCCTCTGCTGTTGGATTGTTCTAAAAAGGATTTTCTGAAATTGCAACGTATTCAGTGGAAAGCATTGCGTATTTCACTTGGTGCTATGATTTCCACGCACACTCTTGGTTTGGAACAAATGGCTAATGTTATGCCACTTCCGGAGCGTTTAGCATTTTTAACAGAGGGCGTCATAAACAAAATATGTTCAATTGATAGTCATCCTGCTAGacaaGTCTTTACAGATGGTTCAAAAAGTTCTGATTCGGTTGGTAGTGGAATTTGGATGCCTGATATAGACATCGAGGCATATTTTTCCTCAAACCCAATTGCATCTATTTATTCAGCTGAAGCGTTAGCTATTTTTGAGGCTATTAAACTGGTTTCGGTACAAGATACGCGTAAATTTCTTATTATCTCAGACAGTAAATCTGCATTAATGGCTATATCTGGGTATTGTAGAAATGAAACTCATCCATATATTTTTCAGATCAAATCTCTTTTGTTGGAGCTTAGGAATAAGGGTGTGCAGATTCATTTTCTTTGGATTCCTAGTCATATGGGAATTGAAGGAAATGATTATGTGGACCAGGTTGCGTCGGGTCATTTGTTCACTCGGAGTGTTGAACGTCTTCCTGTTAACTTCACTGATGTTAGACCTGTTGATAAGCAGTCCTTGGATGTCAAATCTATTTGCCGTACGTGTTCTCAGGCCAGTGAAGACCTACATTCTCTGAATGAACGTGTTGACCAATTCCCTGTGAAGACACTCTCTGACCTATTATTGGACATTGCCAAAATCGATACAAAGgcggatttaaataaaatgatgccAATGAACATGTGTAACACTTGTTCGGAAAAGTTGCAAAATTCATATTTGTTTGTGGTTCAGGCACAAGAAAccaatgaaaagtttttaaagtgtAGTAACACTTTGGTTTCAGAAATCCAGGATGGCACGAATGTTAGTAAATATTTGGACTGTCTATTGGAATCTCCAATAGATATACCTTCCAATACAATGGAGTATATGCATATCAAATTGGAACCTTTTAACACGGAAGAGAGTTTGTTTGGCTCGTTCCCATTGTCAGATGATGTGAATGATAACTTTGATGAAGATGAACCTGAAATGGGCGCAGTTGTAAAAGATATGTACAAAAATACTGTTCATATGTACGGTGAAGTTGACCAAGAGCCAGTTCCTGCAAATTCAAATTGCACGCCATGGAATATTCATGCAACACAAGAGGGTTTAGTCGGTGATAGCAATATTGATCTTTTGAGCAGTACTAAGAATGAAGAGAAAGATACTATGGATCCCATTACAGTTGCATCCAGAGAAAATAAACTTTCTAGTGCAAGCAGTAACAGTGACAACAGCGATGGTGAATGGAGAGAGAAGCCAAAAAGGCGTCCTGGTCGCCCTCGACTTGCCAAAAATAAACCTAATTACAAGGGACGTTTCTCATGTGAAGTGTGTGATAAATCATTTGCATGGAAAAAAGATTTATATCGCCATTTATTGTGCCATGGTGGTACTCCTGCCCACAGTTGTGAATTATGcgataaaaaatttctgcgcaAAGACAAATTAAAAGACCATATTAAAGTTCACCACCGCCATTTGGcggaaaacaatgaaaatagtGGACTCGAACGACGAAAATATCATTCAGGGTGGAGCTTTGCAAAGCACTTATACTGTTATCAAAGTTTTACACAAATTGAGTGCAAGTTATGCAATAGTTCGTTTGAAActatcaaaatgttaaaaacccATCTCACAATGCATGTTGATGTTTCAACTCTTAATTTGACCGAAACCAGTAAAATAATTGAGGAATTGTACTCTCAAACAACTGAAACTTTAGATGAAATTAAATCGCACATTTGTAAGGAAGTAGCAGAGTGTcatttaggaaaattttatgCTATAGTCAATGAAAATGGCTACGAAATGTGTCTTAGCGATTCAGATGCGGACGAAGATCTGTCTGCTACAAAATatacgtgtgaaatttgtatggaaaagtttGCTAGAAAATCACAAGCATTTATACATCTCCAAGAGAAGcatctttttgaaaaagttcCATACAAATGCAACGTTTGCAAAGTCGACTTTATTTGCaaggaaatacaagaaataCACAGTCGAACGCAATgcagaaataaagaaaagaaatacCAATGCTTAAAATGTCCCGGAAAGTTTATGTGGTTAGAAAACTTGGATAACCACAAGTGCTCAAATCGTTTTAATAACCCTGATTACAAATCAAATCTGCCGAAAAAACGGGAGCTTTTGGTATGTAACGTCTGTGATAATACATTTGCTTCGCGAAAGGACTTGAAGAGGCATAAAATTGTCCATGAACGTAACGGAACATCACACAAGTGTTCAATTTGCCTTCAGGATTTTCTCAAAGCTGAAAATTTACGACAGCATTTACGACAAGAACACAAGCAACTTTTTCGCAACATCAAGTGTAGCTTGTGTGGGGAAGAATTTGATAAACTGTCGCAGTTGCGAGTACATTTACCAGTGCATTCTGATGGTTTTACAGCCATTAATAtagaaaaaggaatttttttcaaaacacgcGACCATGATTTCTCCGTTGATAGGAAAAATTCTAAAGTTGTAGATTTAATAgcaagtaattttttacttgaaaatacAACACAATTTTATTCAGCCGTTGATGCAAGTGCCAATGAGTTAGACCTTAACGATTCCGAAACAGAATCTGATGACCACACTCAAAAAGACTCAATGCAGAAACGATTAGTATATCGATGTGAAATTTGTTCACGTGAATACTTTCGACGAAAACATATGTTGTTACATCAGTATACTGAACATAATCAACTGGATGAACTTCCACATCGTTGTGAGAACTGTAATAAACAGTTTGTTTGCCTCGCACTTTTGCAACGACATCAAAGTTGTGATTGTATGAACGCtcacaaaaaatggaaatgtaACAAGTGCTCAACGGGTTTTGTGTGGGAAGACAATTTAAAGGCTCATACAAATGCTAAACACATTGATCTAGAGCaaaaaataagtcgaaaattaGCCAATAAGCTGCAATGCGACGAGTGCGATAAGACTTTTATTTGGCCGAAAGACCTAAATCGACATAAACGTTGTCATTTACCTGATGATGAGAAATTCAAGTGTCCTTTCTGTACACGGCGATTTAACCGAAAGGATAATATGCATGCGCATATGAAAACACATGGAACAGCAGCGAAACAAATAGCAACATCGAAAAGGGACGCGAATAAAGCTGGCAAGCACACTAAAGTTAAAGctCCTGATGACAATTATTGCAAGCCCAATGGTTGCAAGCAAATTCAATGCATGATTTGTTATTCAAAACATACAAAGATCGCTGATTTACGCACTCATATGCGTACACATCAATATGTAGTTTCATTTAATCAGcatgaaagtaaaaatataacTGAGTTATCCTCGTTGCTGTATCCTGGCGAGTCATTTATGACTGAGAAAGATTTGATTGATCGCATTATAACGGATGTAGCCAAAAAACGCTGGGATCGCTTTTATTCCATTACGAATGAGGTTGGTAATGAATTAAGTATCAGCGATTCTGAAACAGAGAGCGACTCAGAAGATGAAGAGGAAACAATACGAAAACATTATTCCTGTGACTTGTGTGAGAAAACTTTTCGGAGAAAGTACAAACTATTCGAGCACCAAAAGTTTTCTCATGATTGGATAGAAGCGCCACATTTTAATACCAACTCTTACGAGTGTGAAGTCTGCCGACGAGTTTTCTCTTGGCAAAAAGATTTGACGCGACATATGCTTGTACATCAACCTGAAACAAAAGTGTTTAAATGCATGTGGTGTCCACGAAAGTTCTATCGTAAAGACAATCTGTATGTTCACATTAAACGACATGGTGTAGCTCCGGAATGTTTAGCGGCAGTTGAAAGCCATATTAGTGCTACTAGTGGACCAAATGGCAAAAAAGATATTATATGCAAAGTCTGCAATTTGCAGTTTTCAAGTATTTTAGCCTTACGTACTCACATAATACAAAGTACACTTAATGTCTCTAATGACCTACCACTTAATTTAGAACATAATAGCTACAGTTCGTTACTGAACTATTCCATAACCAGTCAGCTAGGATTTGAGTTACATTTAGATGATTCAGAATCAGACAATGATGGTATTATTATGCCTAAGGCAGAGGGGGCTCCCTTAAAGTACTCATGCGAGCTTTGTAATGTAGAAACCTTGCGCAAATTCCAAATATCAAATCATCAACGAACAGCTCACCAGTACGAACAACTTACAAGAAAATGCGACAGATGTGCGTTTAAGACAGTGTCTAAGGATATTCTGGAACATCATATGCAGACACAATGCTacaatctggaaaaaaaatttgaatgtaatGTGTGCTCGTTTAAGTTCATGTGGGAGGAAAATCTACGAAGGCACACTCAGTGTATGCACCCTTCAACGTCAGAGCAATGtttaaaactgagcgaaaacGAATCAAGTAAATCATTCCAATGTGAACAATGCAAATGTAAATATAATCGAAAGGATCGATTAACTGCACATATGAAAAAAGCACATCCGGGAAGTGATGCACAGCCAACAAATAGTTCCAAAGTAGAGAGTACATCTGCAAAAGCGTCGTCAAAAACATCTACAttggaaagaaaatttttatgtgcGTTTTGTGGCCATGCTGTAACTTCGTCCTCAAATCTCATCATACATATGCGCCGACATACTGGTGAGAAACCCTTCAAGTGTGACTTTTGTGAAATGGCGTTTCCACGTTCATCTGATTTACAGTGCCATCGTCGTACTCATACAGGCGAAAAACCGCACAAGTGTACCGTTTGCGACAAAGCATTTTCCCGATCTTACAAATTGCAGACGCACATGCGAATTCATTCAGGCGAAAAACCATACAGTTGTACATATTGTGAAAAAAGCTTTACGCAATCGAATGACTTGACATTACACATTCGACGACACACTGGTGAACGCCCATACGTTTGCGGCATTTGTGGGGAGCGTTTTATACAGGGCACTGCACTTAAGAATCATCGTACTATGCGTGGACATTATGAAGATACTAAACCGAGAAAATTAACTGTATTGgaacaattttaa
Protein Sequence
MQRILKLPTKPISAQVSGLNGAIGSNPTMMSSFFVGFPQFKEIPVEVMPLIVPRATENLPSNSFDISQFPEVPTFKLHPKKNSNKPVVPSKRLRLDEAASDAVVDDEVVIVETSGVASADNSSGLDDLKMVIEAQYKIMPLKKKNCSSTLASSYRSIALASTLRKIFERILCARLEWFLESQSKISNSQSGFRKWKSTADNVITLWSAVQLTFLKKESMVAVFLDIKGAFDNVNIKLLWARLKLLGVPNKFCDFIYCLFQFKDLYIQNDDGYVNRHSFTGVPQGCVLSPICFNLYIDEVFSDIIDDVHVLGYADDIVIFCSHSDVSLARAKVQTALSAIVGRLSQLQLELSISKTKAMIFTKRTKNLHNTLPLHIGSNDIEFVDTFNFLGFTFHKHLLLRHHVDRLVKNCFHYINVLRSLCGVSWGSDPHCMIRLYIGLIRPKLEYMAPLLLDCSKKDFLKLQRIQWKALRISLGAMISTHTLGLEQMANVMPLPERLAFLTEGVINKICSIDSHPARQVFTDGSKSSDSVGSGIWMPDIDIEAYFSSNPIASIYSAEALAIFEAIKLVSVQDTRKFLIISDSKSALMAISGYCRNETHPYIFQIKSLLLELRNKGVQIHFLWIPSHMGIEGNDYVDQVASGHLFTRSVERLPVNFTDVRPVDKQSLDVKSICRTCSQASEDLHSLNERVDQFPVKTLSDLLLDIAKIDTKADLNKMMPMNMCNTCSEKLQNSYLFVVQAQETNEKFLKCSNTLVSEIQDGTNVSKYLDCLLESPIDIPSNTMEYMHIKLEPFNTEESLFGSFPLSDDVNDNFDEDEPEMGAVVKDMYKNTVHMYGEVDQEPVPANSNCTPWNIHATQEGLVGDSNIDLLSSTKNEEKDTMDPITVASRENKLSSASSNSDNSDGEWREKPKRRPGRPRLAKNKPNYKGRFSCEVCDKSFAWKKDLYRHLLCHGGTPAHSCELCDKKFLRKDKLKDHIKVHHRHLAENNENSGLERRKYHSGWSFAKHLYCYQSFTQIECKLCNSSFETIKMLKTHLTMHVDVSTLNLTETSKIIEELYSQTTETLDEIKSHICKEVAECHLGKFYAIVNENGYEMCLSDSDADEDLSATKYTCEICMEKFARKSQAFIHLQEKHLFEKVPYKCNVCKVDFICKEIQEIHSRTQCRNKEKKYQCLKCPGKFMWLENLDNHKCSNRFNNPDYKSNLPKKRELLVCNVCDNTFASRKDLKRHKIVHERNGTSHKCSICLQDFLKAENLRQHLRQEHKQLFRNIKCSLCGEEFDKLSQLRVHLPVHSDGFTAINIEKGIFFKTRDHDFSVDRKNSKVVDLIASNFLLENTTQFYSAVDASANELDLNDSETESDDHTQKDSMQKRLVYRCEICSREYFRRKHMLLHQYTEHNQLDELPHRCENCNKQFVCLALLQRHQSCDCMNAHKKWKCNKCSTGFVWEDNLKAHTNAKHIDLEQKISRKLANKLQCDECDKTFIWPKDLNRHKRCHLPDDEKFKCPFCTRRFNRKDNMHAHMKTHGTAAKQIATSKRDANKAGKHTKVKAPDDNYCKPNGCKQIQCMICYSKHTKIADLRTHMRTHQYVVSFNQHESKNITELSSLLYPGESFMTEKDLIDRIITDVAKKRWDRFYSITNEVGNELSISDSETESDSEDEEETIRKHYSCDLCEKTFRRKYKLFEHQKFSHDWIEAPHFNTNSYECEVCRRVFSWQKDLTRHMLVHQPETKVFKCMWCPRKFYRKDNLYVHIKRHGVAPECLAAVESHISATSGPNGKKDIICKVCNLQFSSILALRTHIIQSTLNVSNDLPLNLEHNSYSSLLNYSITSQLGFELHLDDSESDNDGIIMPKAEGAPLKYSCELCNVETLRKFQISNHQRTAHQYEQLTRKCDRCAFKTVSKDILEHHMQTQCYNLEKKFECNVCSFKFMWEENLRRHTQCMHPSTSEQCLKLSENESSKSFQCEQCKCKYNRKDRLTAHMKKAHPGSDAQPTNSSKVESTSAKASSKTSTLERKFLCAFCGHAVTSSSNLIIHMRRHTGEKPFKCDFCEMAFPRSSDLQCHRRTHTGEKPHKCTVCDKAFSRSYKLQTHMRIHSGEKPYSCTYCEKSFTQSNDLTLHIRRHTGERPYVCGICGERFIQGTALKNHRTMRGHYEDTKPRKLTVLEQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-