Basic Information

Insect: Calliopum simillimum
Gene Symbol: -
Assembly: GCA_951812925.1
Location: OX638372.1:38033641-38039116[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00051 0.062 15.0 2.8 1 23 285 307 285 307 0.99

2 14 0.0016 0.19 13.5 1.0 1 23 313 336 313 336 0.95

3 14 0.0013 0.16 13.7 1.9 2 23 340 364 339 364 0.94

4 14 2.3e-05 0.0028 19.3 1.6 1 23 374 396 374 396 0.97

5 14 2.5e-05 0.0029 19.2 4.0 1 23 404 426 404 426 0.98

6 14 0.011 1.4 10.8 0.2 1 23 432 454 432 454 0.96

7 14 0.0029 0.35 12.7 0.1 2 23 461 483 460 483 0.95

8 14 0.00029 0.034 15.8 5.3 1 23 489 511 489 511 0.97

9 14 2e-05 0.0025 19.4 0.8 1 23 517 539 517 539 0.96

10 14 0.0072 0.86 11.4 1.7 1 23 782 804 782 804 0.96

11 14 1e-05 0.0012 20.4 0.7 1 23 812 834 812 834 0.98

12 14 0.0001 0.012 17.3 2.7 1 23 840 862 840 862 0.98

13 14 0.0097 1.2 11.0 0.0 2 23 869 891 868 891 0.95

14 14 5e-06 0.00059 21.4 1.3 1 23 925 947 925 947 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00051	0.062	15.0	2.8	1	23	285	307	285	307	0.99
2	14	0.0016	0.19	13.5	1.0	1	23	313	336	313	336	0.95
3	14	0.0013	0.16	13.7	1.9	2	23	340	364	339	364	0.94
4	14	2.3e-05	0.0028	19.3	1.6	1	23	374	396	374	396	0.97
5	14	2.5e-05	0.0029	19.2	4.0	1	23	404	426	404	426	0.98
6	14	0.011	1.4	10.8	0.2	1	23	432	454	432	454	0.96
7	14	0.0029	0.35	12.7	0.1	2	23	461	483	460	483	0.95
8	14	0.00029	0.034	15.8	5.3	1	23	489	511	489	511	0.97
9	14	2e-05	0.0025	19.4	0.8	1	23	517	539	517	539	0.96
10	14	0.0072	0.86	11.4	1.7	1	23	782	804	782	804	0.96
11	14	1e-05	0.0012	20.4	0.7	1	23	812	834	812	834	0.98
12	14	0.0001	0.012	17.3	2.7	1	23	840	862	840	862	0.98
13	14	0.0097	1.2	11.0	0.0	2	23	869	891	868	891	0.95
14	14	5e-06	0.00059	21.4	1.3	1	23	925	947	925	947	0.98

Sequence Information

Coding Sequence: atgaagacaGAAGTTATAAGTCGTAAAAATATCCACTGCTTTTGCCGCACATGCCTAGCAATGATAGAAAAGAATACTGCGACTAAAGAACAGAAATACAATATCTGTCCGAACAAGGAGCTATCCAAGTTGATTTCTCTTCTAACGTCTGCCGTAGTCAATAAAAAGGATAAATATCCTAAGTTTCTATGCCTGCAATGCTATAAAAAGTTACATAGTTTTAACGAGTTTTGGTCATTGTGCATGCAATCGAAGTGGACACTGGATGGTATTTTGGAAGGCAGGATGAAGACTAATTTGGATAGGCAGATATCGGTGGACACAAAGACTGAACTGCTTGATGATGAAATTGGAGTTATTTGCAAAGCAGAAGAAGAATTCCAGGAACAAAATATTTCTAATGAAACAGAATCAGTGCTGGAAAATAAATCTGATATAGAAGACAAAAATGTGGAAGACGAAACAGATGATAAAACATtgATTGCTTCTATACTAATAAATTCAGATGATGTGATTGAATTCAAGGACGCAAATAACATTGCCATAAATGCCACGGATACAAATTTGGACAGTAAAgaaacatttgaatacaaaaacTGTTCCGAAAAATTAATGGAAAGCGTTGAAGATGATGTTCAAATCACAAACAATTGTATAGAAGATGGTACTCAATCGGTTTCAGATATTGAAACTGAGGATGAAGATCAAGATGATTCCTTTGTTGCTGATACTGAATCTGAAGAGTTTGAATGTGAAAAACCTGCTGATAAGATTCCTAAAAAGCGAGGCGGACGTCGTAAAGATGAAAATGCAGGTACGTCAGTTGAAACGACAAGAAAACGTGAGTTAAAATTTAAGTGTCCGCATTGTACACGTTGGTGCAGGAATCAGGAGAATTTAGATGCGCATATACGAATTCATCAAGGTCTAAAGCCATTTCAATGTAATCAATGTCATCGTGGTTACACACAGGCATTGCGTTTAAAAGCTCACATAAACGATGTGCATGTAGAAATCACATGTTCGTTTGAAGGTTGCGGCAAAATATTTCAACGAAATGGAACTTATCGAGCGCATTATCGAAAATGTCATACCGATGCACAGCCACCAATGACAACTTATATGTGCGAACATTGTGGTCGCACCTTTAAAGGTAATACTGCATTGCGGGTGCATCGTTTAAATCATGCATCCAAGGAAGAGTATCCATATCATTGTGATCTATGTGGAAAACGTTATACTACACAGCGTACTTTAAAAGAACACCAAATGCGCCATGcgggtataaaaaattttgaatgtccTATTTGTGGTGCGAAAAAAACTACGATTACTGAATTGCGTACCCACATAAATTATCATACTAAAGAAAAGCAATGGCATTGCCCACTCTGCCCTAGCGTTTTTATCAGATCTGCAAATTTGGGTTTACATGTTCGCGTTGTTCATAAAGGTATACGTCCCTTTGCGTGTCGTCATTGTGATCAAAGTTTTAGTAGGGCCAGAACGTTAAAACATCATGAAATGCGGCATACTGGAGAGAAACCACATGCATGTGATGTTTGTGGCAAACGTTTTATTCAAATAGTCTCGTTGCGCTCACATTTAAAAACGCACAATAAAGGGGGTGATAAGTTACTGAACCATAGCACCACCACTGCCTTGGCCGAGATCACGGCGGTGATCACAGAGGGGCTTAACTGCAAAAGACCGCACCAGCGTATGGTTGCAGTGGCCCTAGATCTCTCAAAGGCTTTTGATACTGTCGACCACAACATCCTCCTTGCGGATCTTGAAAACACGACCCTCCCCGTCAGCACCAAGAGGTTTCTAGCAGCCTATTTACATGGTAGACGGGCCTTCGTGGAATTTAGAAGTGCTAGCTCTAAATTCCGAAAATTGAAGATGGGCGTGCCGCAAGGAGGCGTGCTTTCGCCTCTACTTTTCAACTTCTATCTTTCCACCATGCCACCCCCTCCTTCCGAGGTCACTTTGGTCTCATACGCTGATGATTGCACTATTGTGGCATCAGCAAAAACTGTTTCGGAGGCTGAGCAGAGGATCAATGCGTATCTTGTTGTACTCAAGCGGTTCTTTGAGGACCTCCGCGAGGCCCTCAATGATCTGCATATGCACCTTGCCACTACGGCTATTGAATCACTGTCACttaataaagtgctcaatagccgccCTCCACTAATCAATCctaccctggagttcgagttgctacaacaacaacaacaacgacaaatgATTCAGAGTCACTTTCAGAAAATGAAACAGAACAGGTACCGAGCTCATTTTCGACTTAAGCATACCGAAAACCAAGTTCCACGTGTGACACACGTTTGTGAAGATTGTGGGCGTATCTTTCAGAATGTAACTAGACTACGAGAACATCGTTACAAGCATTTTCCCAAAGAGTTAAATCCATACAATTGCGAACAATGTGGCAAACGTTATGCTTCAAAGGAATTATTAAAGGAGCATCAGTTGCGGCATGCCGGCATCAAAAAGTTTGAATGCAAATTTTGTGGCATGAAGACGACGACTAACAAGGAATTGAAAAGACATTTAAATTATCACATAAAAGATAAGCAGTGGCCGTGCCAACTTTGCACAAGTGTTTTTAATAGCTCCGCCAACTTAGGCGTACATGTTCGTATTGTACATAAAGGCATACGCCAGTTTGCATGTGGATATTCTGATCAAACTTTTGGTAAAGCTGATACTTTAAAGCATCATGAAATGTGCCATACTGGAGAGAAACCACATGAATGCCAAACTTGTGGCAAACGTTTTATACAGGCGGTTGCTTTGCGAACACACTTAAAAACCCATAACAAATTAGCAGCAAAACAGCAAAAGTTgcaacaagaaatatttttgcaacagCCACAAGTATCAGGCCAAAGATTAAAGAAATAG
Protein Sequence: MKTEVISRKNIHCFCRTCLAMIEKNTATKEQKYNICPNKELSKLISLLTSAVVNKKDKYPKFLCLQCYKKLHSFNEFWSLCMQSKWTLDGILEGRMKTNLDRQISVDTKTELLDDEIGVICKAEEEFQEQNISNETESVLENKSDIEDKNVEDETDDKTLIASILINSDDVIEFKDANNIAINATDTNLDSKETFEYKNCSEKLMESVEDDVQITNNCIEDGTQSVSDIETEDEDQDDSFVADTESEEFECEKPADKIPKKRGGRRKDENAGTSVETTRKRELKFKCPHCTRWCRNQENLDAHIRIHQGLKPFQCNQCHRGYTQALRLKAHINDVHVEITCSFEGCGKIFQRNGTYRAHYRKCHTDAQPPMTTYMCEHCGRTFKGNTALRVHRLNHASKEEYPYHCDLCGKRYTTQRTLKEHQMRHAGIKNFECPICGAKKTTITELRTHINYHTKEKQWHCPLCPSVFIRSANLGLHVRVVHKGIRPFACRHCDQSFSRARTLKHHEMRHTGEKPHACDVCGKRFIQIVSLRSHLKTHNKGGDKLLNHSTTTALAEITAVITEGLNCKRPHQRMVAVALDLSKAFDTVDHNILLADLENTTLPVSTKRFLAAYLHGRRAFVEFRSASSKFRKLKMGVPQGGVLSPLLFNFYLSTMPPPPSEVTLVSYADDCTIVASAKTVSEAEQRINAYLVVLKRFFEDLREALNDLHMHLATTAIESLSLNKVLNSRPPLINPTLEFELLQQQQQRQMIQSHFQKMKQNRYRAHFRLKHTENQVPRVTHVCEDCGRIFQNVTRLREHRYKHFPKELNPYNCEQCGKRYASKELLKEHQLRHAGIKKFECKFCGMKTTTNKELKRHLNYHIKDKQWPCQLCTSVFNSSANLGVHVRIVHKGIRQFACGYSDQTFGKADTLKHHEMCHTGEKPHECQTCGKRFIQAVALRTHLKTHNKLAAKQQKLQQEIFLQQPQVSGQRLKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -