Csim019185.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- -
- Assembly
- GCA_951812925.1
- Location
- OX638369.1:90231339-90235724[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.014 1.7 10.5 4.6 1 23 33 55 33 55 0.96 2 15 0.00034 0.04 15.6 7.2 1 19 61 79 61 84 0.91 3 15 1.4e-05 0.0017 20.0 1.6 1 23 90 113 90 113 0.96 4 15 0.00079 0.095 14.4 4.0 1 23 124 147 124 147 0.96 5 15 1.5e-06 0.00017 23.0 1.7 1 23 255 277 255 277 0.99 6 15 2e-06 0.00024 22.6 2.0 1 23 283 305 283 305 0.98 7 15 0.0062 0.75 11.6 0.6 1 23 318 340 318 340 0.97 8 15 0.0049 0.59 11.9 1.6 1 21 348 368 348 369 0.93 9 15 3.6e-05 0.0043 18.7 1.4 1 23 429 451 429 451 0.98 10 15 7e-05 0.0084 17.8 1.6 1 23 458 481 458 481 0.97 11 15 0.15 18 7.3 7.8 1 23 487 509 487 509 0.97 12 15 8.3e-06 0.001 20.7 1.7 3 23 590 610 589 610 0.99 13 15 3.6e-05 0.0043 18.7 0.9 1 23 616 638 616 638 0.98 14 15 0.00022 0.026 16.2 0.7 1 23 645 667 645 667 0.97 15 15 0.0016 0.19 13.5 2.7 1 22 673 694 673 694 0.95
Sequence Information
- Coding Sequence
- ATGAACACTGTCCACTACGTAGGTATTGATGGACAAATGGAAGAAATTATGGCAAAAGCACATCCAAAACCAAAACGTACTGCTATAAATGGCAAATATGAATGTTGTAGATGtagcaaaatatttaataaaccaTGTTTACTGCAACGTCATACCGTTGTTCATTCGAGCGAAAAACCCTACCAATGTGAGTCCTGCAAGaaaagtttttctcaaaaatcgtcCTTACAACGTCATTGCCAGCACCAACATATGGGAGTGAGATCACACAGATGTCCAAAATGCAAAATTAGTTTTGCACAGAAAACGAATTTACTCTGGCACATACAACAAACACATCCCCTAGAACCATCAACAGCAAAAAATCGATTCGCCTGTGATTACTGCACATGCACATTTACTAAACTCAATAGCTTAAATCGACACATaacgaaaaatcattttgcaaCGGAGTCAGCGCGTATAGCACAACTCGAAATTGCATTTCAAGATGAAACGCCTGTTGATGATGCAGCTGAGCTAGCGCGTAATGTTGTTttggaattgaaaaaacttcaaGGTGATATCGAACccataaaaattcaaacaacGGAAAATGAACCCGTAATTTATGAAACAACGGTTGCAGGCACTGTACAAACTTCAACAGTGATTGACGAGTCTGCAATTCATGTAATGCAAGTAGTTGATAAACTAAATCCGTTAAAAGAATGTAATACATTTGATGTCCAATGCATAAAACGCAATGATGGGATATCTTACTATGTGTGTGATTACTGTGCAAAGGAGTTTAGAAAGTCCTATAACTTGATAAGacATCGTCGTTCGCATCTTAAGGAAACGCCCTACAAATGTGAATACTGCAGTAAAGCATTTGTTACAAAATCCAAATTGAAAGAGCATAAAAATGTTCATATTTTATCCGGATACATTGGCCGCGTAAATAAACAATACAACTGCAGCATTTGTCAACAGAAATTTGATTCGATTCGCCAGTTGGATGCGCACAACAGaTTACACCTTCAAACTCATAGTTTGCTCTATGTTTGTTCGGTTTGTTCACGCACTTTTAACACACTAGGATCATTTTCAACACATAAGCACACTGCGTCAGACTGTGATCTTCAAGCTCTTACGAAACTACTGCCAGAACCTATAAACATACAAGCAACAGGCGATAAGGATAATTCAAAATCCACTCAACTAACACAATTACAATGTGATATGAAATTGCAGAATTTGCGAAGGCATAAGAAACCCCAACGGCGATATAAAGGTTTAAAGTTTAAATGCAGCAATTGTGGCCGTTTTTACTCTACATTGAGCGCACTTAACTTACATTTCAAAATTCACACAGCAAATAGTAGACGATTTAGTTGTAAATACTGTGCGGAAAAGAAATTTACAACAAAGTCAGGATTAAAACGCCATATGATAGTACACAAtgagtttaaaaatttcaaatgtgtaTATTGTGAGAAAATCTTTAAAACCAAAGAAAACTGCAAGTGTCACATGAGGCTGCACTTAAAAGCACTGCTTGAACCAGTTAATGTAGAGTTTGCAGTGGATCCAAACCAAGAATGCCAGCTTGTTGTGCAAGAAACTGAAAAACAATCAACGGTaccaaaattcatcgaattGCAAATGCTTACAAAATATCGTAAGCATAACCAACACAAAAATATAACCATTGAAGCTATGCCATCAGTCGTCAGCACATTGCAACCAATCACTGAAGGCGTTGCAAAAGCGGAAAAGAATTTATGCTCCCTATGTCAGCGTAGTTTCCAAAAACCTAGCGACTTGAAACGCCACCTACGTACGCATACGAAAGAGCGACCATTTTCATGCGAATTGTGTTCGAAATCTTTTGCCTTACAATATACCTTAAAGGAACATCTATTGACGCATACTCAAAAACGGTCTAAATACGATTGTCAAGTTTGTGGCAAGCATTATGCATCGAAAAAAGTACTCGTTGTGCATTTACGTTTACATACCGGAGAGCGACCATTTAGCTGCGAACACtgtgctaaaaattttcgtacCTCTGGACATCGCAAAGCGCACATCAAAAAATGCAACTTAGTTAAAAACTAG
- Protein Sequence
- MNTVHYVGIDGQMEEIMAKAHPKPKRTAINGKYECCRCSKIFNKPCLLQRHTVVHSSEKPYQCESCKKSFSQKSSLQRHCQHQHMGVRSHRCPKCKISFAQKTNLLWHIQQTHPLEPSTAKNRFACDYCTCTFTKLNSLNRHITKNHFATESARIAQLEIAFQDETPVDDAAELARNVVLELKKLQGDIEPIKIQTTENEPVIYETTVAGTVQTSTVIDESAIHVMQVVDKLNPLKECNTFDVQCIKRNDGISYYVCDYCAKEFRKSYNLIRHRRSHLKETPYKCEYCSKAFVTKSKLKEHKNVHILSGYIGRVNKQYNCSICQQKFDSIRQLDAHNRLHLQTHSLLYVCSVCSRTFNTLGSFSTHKHTASDCDLQALTKLLPEPINIQATGDKDNSKSTQLTQLQCDMKLQNLRRHKKPQRRYKGLKFKCSNCGRFYSTLSALNLHFKIHTANSRRFSCKYCAEKKFTTKSGLKRHMIVHNEFKNFKCVYCEKIFKTKENCKCHMRLHLKALLEPVNVEFAVDPNQECQLVVQETEKQSTVPKFIELQMLTKYRKHNQHKNITIEAMPSVVSTLQPITEGVAKAEKNLCSLCQRSFQKPSDLKRHLRTHTKERPFSCELCSKSFALQYTLKEHLLTHTQKRSKYDCQVCGKHYASKKVLVVHLRLHTGERPFSCEHCAKNFRTSGHRKAHIKKCNLVKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -