Csim013236.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calliopum simillimum
Gene Symbol
su(Hw)
Assembly
GCA_951812925.1
Location
OX638368.1:132380452-132385567[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.003 0.36 12.6 2.1 1 20 131 150 131 151 0.95
2 12 8.5e-07 0.0001 23.8 0.4 3 23 203 224 201 224 0.93
3 12 0.03 3.5 9.5 0.3 1 23 230 252 230 252 0.97
4 12 1.1e-06 0.00013 23.4 1.2 3 21 261 279 259 280 0.94
5 12 8.7e-06 0.001 20.6 0.9 3 23 293 313 291 313 0.96
6 12 3.9e-05 0.0046 18.6 3.0 1 23 324 346 324 346 0.98
7 12 7.9e-06 0.00094 20.7 0.8 1 23 352 374 352 374 0.98
8 12 2.4e-06 0.00028 22.4 0.5 1 23 380 402 380 402 0.99
9 12 1.5e-06 0.00018 23.0 1.6 1 23 408 430 408 430 0.98
10 12 0.00054 0.065 15.0 0.9 1 23 434 456 434 456 0.98
11 12 0.00083 0.1 14.4 5.3 1 23 470 492 470 492 0.96
12 12 0.06 7.2 8.5 0.2 3 23 506 527 504 527 0.94

Sequence Information

Coding Sequence
atggaaagaaaatcggAAAGAACCCGAGCCAGCCGAAgtggcataaaaattttgaatgttgaAACATTAAAGGCTGCGCCTTTGAGACCTGTTGTGACTTCTGATTCAATGCCACCTCCAAAACAGATTAAAATGTCTATAGCTAAGAGCAAATCAGAAATAATTCAACAGAAAAAAATGGATCATTATGTATTGCATACCGTTAAGGGCGAAGCTGATACAGAAGGATATAATGgagaaaatattgatttcatATATACAGATAATCAAGGTGAAGAGATTTTTGGTGGTGAAAGTGGCGAAATCACCGAAACGTTACATTTGAGTGGCAATGAAGATGATGAAAATGAACATGAAATGAATGATATTAGAACCGAAGAGATAGTTGAGCATGTATGTGGAAAATGTTTCAGAAGCTTTAAACGTTTTAACgcattaaaaaaacacttggacttttgtCGATATGACAGTAAATATCATTTGCGTAAGgctgaaatgcttaaaaatgttgagaaaattgAAAAGGATGCCATCATAATGGAAAATAAAGACATATGTTTTTGTTGTGGTGAAAGTTATGATACATTCCATCTTGGTCACATTAACTGTCCCGATTGTCCAAAATCTTTTAAGACGCAATCAAGCTATGAACGTCATATTTTTATAACGCACTCTGAATTCATGGATTTTCCATGTACTATTTGCAATGCAAAATTGCgaagtgaaaattttcttaaacttcaCATTGAGCAACATCAAAATCGTGGCAAACCATGGGCCTGTAAAATTTGTGGCAAAGATTTTACACGTTCGTATCATTTAAAGCGGCATCAAAAGTATTCCGCATGTTCGGCGGACATTAATGATGCTATGAATTGTAAAGTTTGCAATAGAGTCTTCTATCGATTGGATAATTTGCGTGCTCATTTGAAACAGCATTTAGGTTCACATTCCACTAAAAAGTCGGAATATATGTGTCCAATCTGTAAAAACTGTTTCTATAGCTTATCTACTTTAAAcaTCCACACCAGAACCCATACAGGTGAGCGCCCATTCGAATGTGATTTGTGCGATAAAAAATTTCCTTCTTTGGTTGCTTTAAAAAAACATCGTCGATACCACACTGGGGAAAAGCCTTATACTTGCACTGTTTGCGGTCAAACATTCGCCGTCAAAGAAGTTTTGAATCGACACATGAAACGACATACAGGCGAACGGCCACATGTATGCCAAGAGTGTGGAAAGAGTTTTATTCAAGGAACGCAGCTAAGAAATCATTTAAGAACGCATCTGCGCCCATTTGAGTGCGgaaattgtttggaaaaatttaaaactcaaaaacaACTCGACAGACATgcaaaaattcataaagttaAAAAGGTAAAAGGAAAGACTAAAAAAGGAGAACATGTATGTAGtttgtgtaacaaaatttgcaaaaataaggAGGAACTTAAGCGACATACTGACAAACATAATGgtatcatcacaaaaaaaagagCAACTCGCACAGATTGTGCCatatgcgaaaaaaattttgatacagttaaaaatttagaatttcatATACTCAAAGTACATGAAGTGGATCCCGAAGAATTTATCAATGAAAAACGCATGCAGGAACAAGATGCGCCTCCAGCTACTGAAATTATTAAACTCGAAAAGGCTGAAGGTGTTGAAATACTTGACGAACGATTTAATTTTATATCGTCGAAATTAAATATGGATGATGCAACCACTACTACTGATGGGGATGGTACCGTTATTGTTCAAGAATTTTATTTGGATGAATTACCTACAACTTCGAGCTCAAAGCAGactatatttttgaataaagatgCATTTACCGTCATTCCATTAGATGCAGCAGAGAGTATAATGGCAGGTTGCGAAGATACCTTTACTATACAAGCTCTTCCTAAGGAAGCGTCTCCTAAGCAAGCTTCTCCTAAACGGGTATCTTCTAAAAGAGCTTCTCCTAAAGATGGTTCTGCTGAAAAAGCTTCACCAAGTACGAAAATTTGTCTTAGAAAATCACTTGCTGAGAGTTTAGCTGCCGCAATTGCAGACGATGAAGATGATGATATTAATATTGAAGTCGCTAGTGCAGAAGATGAGAAGATAAAAGAAAACGTTAGCAAATTGCTGGATATGCTAGTGGACAAGGTGACACTCAAAAGATTTGGCTGGCCTGAAAATTCAGTGGAAAATGTTCTttgtcaagttattgaaaactgTGGGCATGAATTGTCGAAAGATGCCGACACTTACATAAATTGCGATTTTTCAACACGTATGCGCGAATATGTAAAGCTCTTATTTACAGTGGTAATACATAATGATTCTATAAAAGAATTACTGAATAACTATCCTATCGACGAAGTTATTGAATACGTATTGGGaaatgatgaagatgatgacgAGGAAGATAATGACGAGGACAATGGTGATATGAGAAATGAACAGCGAAATGGGAATGGAATAGaagcttga
Protein Sequence
MERKSERTRASRSGIKILNVETLKAAPLRPVVTSDSMPPPKQIKMSIAKSKSEIIQQKKMDHYVLHTVKGEADTEGYNGENIDFIYTDNQGEEIFGGESGEITETLHLSGNEDDENEHEMNDIRTEEIVEHVCGKCFRSFKRFNALKKHLDFCRYDSKYHLRKAEMLKNVEKIEKDAIIMENKDICFCCGESYDTFHLGHINCPDCPKSFKTQSSYERHIFITHSEFMDFPCTICNAKLRSENFLKLHIEQHQNRGKPWACKICGKDFTRSYHLKRHQKYSACSADINDAMNCKVCNRVFYRLDNLRAHLKQHLGSHSTKKSEYMCPICKNCFYSLSTLNIHTRTHTGERPFECDLCDKKFPSLVALKKHRRYHTGEKPYTCTVCGQTFAVKEVLNRHMKRHTGERPHVCQECGKSFIQGTQLRNHLRTHLRPFECGNCLEKFKTQKQLDRHAKIHKVKKVKGKTKKGEHVCSLCNKICKNKEELKRHTDKHNGIITKKRATRTDCAICEKNFDTVKNLEFHILKVHEVDPEEFINEKRMQEQDAPPATEIIKLEKAEGVEILDERFNFISSKLNMDDATTTTDGDGTVIVQEFYLDELPTTSSSKQTIFLNKDAFTVIPLDAAESIMAGCEDTFTIQALPKEASPKQASPKRVSSKRASPKDGSAEKASPSTKICLRKSLAESLAAAIADDEDDDINIEVASAEDEKIKENVSKLLDMLVDKVTLKRFGWPENSVENVLCQVIENCGHELSKDADTYINCDFSTRMREYVKLLFTVVIHNDSIKELLNNYPIDEVIEYVLGNDEDDDEEDNDEDNGDMRNEQRNGNGIEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01486504;
90% Identity
-
80% Identity
-