Csim035550.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- -
- Assembly
- GCA_951812925.1
- Location
- OX638372.1:48797256-48806256[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.7 2e+02 3.9 0.1 9 23 158 173 157 173 0.92 2 18 0.0023 0.28 13.0 3.2 1 23 179 202 179 202 0.98 3 18 0.0089 1.1 11.1 3.1 3 23 213 236 211 236 0.92 4 18 0.00016 0.019 16.6 1.5 1 23 246 268 246 268 0.97 5 18 0.0003 0.036 15.8 6.7 1 23 276 298 276 298 0.97 6 18 0.00039 0.047 15.4 0.6 1 23 304 326 304 326 0.97 7 18 0.0039 0.47 12.2 0.0 2 23 333 355 332 355 0.95 8 18 0.0011 0.13 14.0 1.1 1 23 361 383 361 383 0.97 9 18 7.7e-07 9.2e-05 23.9 1.1 1 23 389 411 389 411 0.96 10 18 5e-05 0.006 18.2 1.4 1 23 598 620 598 620 0.95 11 18 2e-05 0.0024 19.5 1.0 1 23 626 649 626 649 0.98 12 18 0.0016 0.2 13.4 2.3 1 23 657 682 657 682 0.98 13 18 6.5e-05 0.0078 17.8 2.4 1 23 692 714 692 714 0.97 14 18 0.052 6.2 8.7 3.9 1 23 722 744 722 744 0.96 15 18 0.0014 0.16 13.7 1.9 1 23 750 772 750 772 0.98 16 18 0.00022 0.026 16.2 0.0 2 20 779 797 778 798 0.95 17 18 4.7e-05 0.0056 18.3 2.5 1 23 807 829 807 829 0.98 18 18 7e-06 0.00084 20.9 1.4 1 23 835 857 835 857 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTTGAGTTTATAAATCATAATAATGTGCAACAGTTTTGTCGCACCTGCCTCAGAtcatttgaaaaacatttagaaGGCCGAAAATACAATATGACGCCAGATCTTTGTAACTGGATTCATATCTTCACATCGTTGgactttttaacaaatgaaaACTATCCAACATGCATTTGCCACGAGTGTTACGAGAAGCTAAAAAGTTTTCATGACTTCTGGGAAATGTGTATGAAGTCTAATAAAACTCTTGATGGAATACTTGGTAAATCCTCTGATGATACTAATTCCGGAATTCAAATTGCTATGAGAATGGCAAAGAGTGAAATTTGCGATGATAACAATATTCTGGAAAAATATGACACCGTGGATGTGGATGAATCAAAAGGATGTAAAAAGTCTTATTGTCCAGAAAATGACGAGAACGATGACAAATCATTGGTATGTCAATATTTAGATTGTATTATAAttaaattttacaaacaagATAGTTTGGATGCTCATATTCGTCGCGATCATCAAGGTTTAAAACCTTTTCAATGTAATAAATGTGACTGTGGATACAATAAGGCATACCGACTTAGGTTACACATGAACCGAATTCATGGTGGCAATAAGATAAATGAGGAAGTCATATGCCATATCGACGGATGTggcaaaaaatttcgaaacacTGCATCTTATAAAACACATTATCATAATAAGCATACGGAACGGGCAAACCTATTGAGAACATTTATATGTGAAGATTGTGGTAGCTCATTTAAGAATATGGTTTCATTGAAGAAGCATCGCTTCAAACATGGACCACCCGAAGCCTATCCATTCCATTGCGAACAGTGTGATAAACGTTTTTCCactaaatacaaatacaaacagCATCAGGACAGACATGCgggtattaaaaattttgaatgtccATATTGTGGATTAAAAAAGACAACAAACGATGAACTACGTACTCACATTAACTATCATACCAAGGAAAGGCAATGGCCATGTCCGGATTGCACTAGCGTTTTTAATAGCTCAGGCAGCTTGGGTCAACACTTTCGTATTGTTCATCAGCGAATACGCCGTTACGCTTGCCGGTACTGTGGAGATAGTTTTGCTAAACCGGAAACGTTAAAACATCATGAAATGCGACATACAGGAGAAAAACCACACGCTTGTCAAATATGTGGCAAGCGTTTCATTCAGCAAGTAGCATTGCGTACACATTTAAGAACGCACGAAAAagAAACTCTAGACACTTTGCTAAATGTCTGCAATGAGCCAGATATACAAAAAGAGACTACAACTACAAAAGAAGAGGTTTGCTATGATGAAACCGAAACCAACGTAACGTACAAAACTGAGCAGGACAAGGACGAAGAATCCGGTGAATGTAAAAATGATGATTGGTTTGAATTCGAAATGGATGATAAATCGCTGATAGCACCTCTACTTATAAGTAACTTTGAGCTggaagattttaaaaaagaaaccaGCGATACAAAAATTGTTGACGCTGGTAAGGAAAATTTGGAAGACAAAGATGcatttgaatataaaaattgttctgAATTCGCTATTGAgggaaataataataaaataataaatgcagCCGATTGTTTAGACGTTGAcattaaaatcaatacaaacgATGAACATGAAAGTTCAATTGAACAAGCAAGTAGCTTTGAAATACAAAGtactttagaaaaaacaaagaaatctaCCGTAAAGAAAGCGTCCCAGAGATCTAAGTCTCCGCTTGATGAAACAACGTTgccaaaagaaaaacttaaatttctaTGCACACAATGTTCGCGTCGCTTTATCAATCAGGAAAACCTGGATCGACATACACGTATTCACCAAggcttaaaactttttcaatgcgATGAATGTGATCGGGGATTTAATAAGAGAAGCCGTCTGAAGGAACACGTCAGGAGGATACATGAAAATCATATCGAAGAAGAATTTCAATGCACATTTGAGGGTTGCGATAAGTTATTTCGAAAGAAAGAATCCTGGCGTATACACTATCGCAAAAAACATACCAACTATGAAGAAACACGACCAACTTATATGTGTGAAACTTGcggaaattcttttaaaaatgcaaattcgCTTAAAAAGCACCGTTTCAAACACGGTCCTGAGGAAGCATATCCATTTCAGTGCAAACAGTGCGGTAAACGTTTTCTAGCTAAATGTAAATTACAAGAACATGAGATGCGACATgcaggtataaaaaaattcgaatgtCCGCATTGTGGAATGATGAAAACCACTCGCAATGAGTTACGTATGCACATGAACTATCATACGAAAGAAAAACAATGGTATTGTCCATATTGCGCTAAAGTCTTCAATAGTTCTGGCAATATGAATCGACATATTGTATGCGTACACAAAGGTGAACGAAATTATTCCTGTAGTTATTGTGAAGAGAGTTTTACTAAGGCCGAATCATTAAAACATCATGAAATGCGTCATACAGGCGAAAAACCACACGCTTGTCAAATATGTGGCAAGCGTTTTATACAACGGACGGCGTTGCTTACTCATTTAAAAActcatgcaaaaaataaaagaaaagctgATAGGGAAACAACAGCAGAAACTGCAGCAGCAATAGACATCGGAGCATCAACTTAA
- Protein Sequence
- MEVEFINHNNVQQFCRTCLRSFEKHLEGRKYNMTPDLCNWIHIFTSLDFLTNENYPTCICHECYEKLKSFHDFWEMCMKSNKTLDGILGKSSDDTNSGIQIAMRMAKSEICDDNNILEKYDTVDVDESKGCKKSYCPENDENDDKSLVCQYLDCIIIKFYKQDSLDAHIRRDHQGLKPFQCNKCDCGYNKAYRLRLHMNRIHGGNKINEEVICHIDGCGKKFRNTASYKTHYHNKHTERANLLRTFICEDCGSSFKNMVSLKKHRFKHGPPEAYPFHCEQCDKRFSTKYKYKQHQDRHAGIKNFECPYCGLKKTTNDELRTHINYHTKERQWPCPDCTSVFNSSGSLGQHFRIVHQRIRRYACRYCGDSFAKPETLKHHEMRHTGEKPHACQICGKRFIQQVALRTHLRTHEKETLDTLLNVCNEPDIQKETTTTKEEVCYDETETNVTYKTEQDKDEESGECKNDDWFEFEMDDKSLIAPLLISNFELEDFKKETSDTKIVDAGKENLEDKDAFEYKNCSEFAIEGNNNKIINAADCLDVDIKINTNDEHESSIEQASSFEIQSTLEKTKKSTVKKASQRSKSPLDETTLPKEKLKFLCTQCSRRFINQENLDRHTRIHQGLKLFQCDECDRGFNKRSRLKEHVRRIHENHIEEEFQCTFEGCDKLFRKKESWRIHYRKKHTNYEETRPTYMCETCGNSFKNANSLKKHRFKHGPEEAYPFQCKQCGKRFLAKCKLQEHEMRHAGIKKFECPHCGMMKTTRNELRMHMNYHTKEKQWYCPYCAKVFNSSGNMNRHIVCVHKGERNYSCSYCEESFTKAESLKHHEMRHTGEKPHACQICGKRFIQRTALLTHLKTHAKNKRKADRETTAETAAAIDIGAST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -