Csim039032.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calliopum simillimum
Gene Symbol
PZF1
Assembly
GCA_951812925.1
Location
OX638372.1:109791516-109796417[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2e-05 0.0024 19.5 0.4 2 23 214 235 213 235 0.93
2 16 0.00033 0.04 15.6 0.5 1 23 241 263 241 263 0.97
3 16 1.8e-06 0.00022 22.7 0.3 1 23 278 300 278 300 0.99
4 16 0.0046 0.56 12.0 3.8 1 23 309 331 309 331 0.98
5 16 0.041 4.9 9.0 5.3 1 23 461 483 461 483 0.97
6 16 0.00024 0.029 16.1 0.8 1 23 489 512 489 512 0.95
7 16 1.3e-06 0.00016 23.2 0.9 1 23 520 542 520 542 0.98
8 16 1.3e-05 0.0016 20.0 1.4 1 23 552 574 552 574 0.98
9 16 0.00054 0.064 15.0 3.1 1 23 580 602 580 602 0.98
10 16 0.00014 0.016 16.8 2.2 1 23 606 628 606 628 0.98
11 16 5.8e-07 7e-05 24.3 0.6 1 23 634 656 634 656 0.96
12 16 0.035 4.2 9.3 7.5 2 23 663 684 662 684 0.97
13 16 1.9e-05 0.0023 19.5 0.6 1 23 690 712 690 712 0.97
14 16 0.11 13 7.7 8.0 1 23 718 740 718 740 0.98
15 16 1.1e-05 0.0013 20.3 1.4 1 23 746 768 746 768 0.98
16 16 0.00017 0.021 16.5 0.7 1 23 774 796 774 796 0.96

Sequence Information

Coding Sequence
ATGCCTTTTTGTACTTTCGATcaattatttttccattttccctCTGAGGATCATAATTATCCCAATCTTCAATTTACAATTCCTCAATATCTGTTGCAAATTTTGGGACAAATGTGTCGCGCTTGTATGTGTAAGAACCAAAACTTTCATTCCATCAACGATGAAGCGGACAAACCTTTGACTATACACGAAATGTTTGCGACGACGATACCACAAGTGTCCATACACATCAATGACCAGTTGCCAAAGTTAATCTGTGTACCATGCCTGAACAAATTGAAAATCACTTATCAATTCCAACAAATGTGCATTGCTTCAGAGAAGTATATGCGAAAAATGCTACTCGGCTTAGTGGAAAATCTTGGAAAGCGGACGGAAACGCCTGAAGAAACACAACTGGTAGACAATCCGCCAAAAAGTGAATACGTTTCATTAGAATCTGGCGAAGAATTTCTGGAAAATAATGATATACTCTCCGAACGAAGTGGAAGTGACAACAGCAGTGACTGCAATCAAGTCAAATCAACGTCCAAAATAAAAGGAACAAAGCAACAGCACTGCATTGCAAATATACTTAATGAAACGGGCATAGTTGAAATTGAAAAACCCAATGTACGCAATCGTCGCAAAAATGAGTTACCCTGCCCACATTGTAATAAAGTTTTTGATCGTCCATATCGACTGAAGCGTCATGCTGGCGTACACCGTGAGACGCTTCCATATTCTTGTGAAATTTGCAAGTATCGCTTTAAAACTGCTAATCAACTTGCAGGCCATAAAGCTTCACATGATGGTGGTAAACTGATGGAGAAATTGCCACCGCCTGAAGGATATAAATGTCCGGATTGTCCGAGacgttttgaaaaaagtaattcatTAGCAGCTCACACACGTGTACATCGCAAACCTGATCctaatcaaattttcaaatgttgctTATGTCCaaaaagatttcgaaaaatcacaaCACTTTCCCAACACGCGCTTACACATCCAGAAaatcaaaagcaacaaaaggATCTCCAGCATAAGGCATTAGCAGAAgaaaccgaaaaatttaatggaGTTCACGATCCACTCTCTATTAAAACTGAAACAAATGATGAAGCATTGAATGAATCAGTTTTATTGGAATCAACTTATCTAAATAAGATGGATATGGATTCTGAATGGAGCGATGGTGATGACATtaaGCATCTTGAGAATAATACAAGCACGGATCCAAATTCCGCTGATAACGTTGACTGCCAAATGAAAACTTTGTCAAAAGAGCGCAAGACAGAACAAAATGCATTCACACCTAATATTAATGATACTGCAGATGAAACAAGAGTTAACACAATTGAAAAACCTAATGCACAGTTTAAtcgcaaatataatttttgctgCGAAAAATGTGATGCTGCTTTTTCGTGTAACGATAAGTTGCAAAAACATTTTCGTGTTCATCTTCAGGCAAATCCATTTGTTTGCGAAATTTGCAATTATCGCTTTAAAAGGATATCTTCATTATCATACCACACCGCAGTCAAACATGAAACTGTACCGCCCGATGGCTTTAAGTGCCCAGATTGTCCAAGACGATTTGAGAAAAGTGATTCCTTAAGGAGGCACACAATAAGCCATCAAAAAATGCTGCCTGATCAATGTAAATTTAAGTGTAATTTGTGcccgaaaaaatttcaaaatttgtcatCACTAACGCAACATGCGCGCTTGCATCcggaaaataagaaatttaaatgTACCTCATGTGAGGCGTCATTTAGTTTGagctcaaaacttgaaaatcaCATGCACAAGCATAATGGTTTATACATTTGTGAGCATTGTAAAAAAGgcttcaaaaaaaagattgtaCTCAAAGAACATCTACGCATACATACCGGAGAGAGACCATACCTTTGTCCACAATGCGGTAAATCTTTTCGAACATCCTCAGGCTTGGCCGATCATCGAAAACGGCATTCTAATATAAAACCCTGTCAGTGCACAGAATGCCCACGCACATTTTCATGTCATTCGGATCGAATTAAACATATGAGAGTGCATCGAGATATAAAGCCACATTCTTGTGATATTTGCGGATCCAGATTTACTCGTGCTAATTCTTTGAGAGAGCATATGGCTATTCACACTGGCGAACGTCCTCATAAATGTGATGAATGCAGCTTAAAGTTTGTTTGCAAATTCAAACTAAAACGTCATCAACGTTCACATACTGGTGATAAACCACATAAATGTAAGCTTTGCGAAAAAGCTTATGCTCTGAAAGGTGATCTAACTAAACATATGCGTATACATCTCGGCGATAAGACATATTTTTGTGAAGAGTGTCCTGAAAAgtttaaatatcaaaaagaaTTGCTCTCTCATCAATCGGCtcattttaaacagaaaaaaattgaatCTTTGAAcgatatgcaaaaaaatgtgGAGGAATCAACGATTTAA
Protein Sequence
MPFCTFDQLFFHFPSEDHNYPNLQFTIPQYLLQILGQMCRACMCKNQNFHSINDEADKPLTIHEMFATTIPQVSIHINDQLPKLICVPCLNKLKITYQFQQMCIASEKYMRKMLLGLVENLGKRTETPEETQLVDNPPKSEYVSLESGEEFLENNDILSERSGSDNSSDCNQVKSTSKIKGTKQQHCIANILNETGIVEIEKPNVRNRRKNELPCPHCNKVFDRPYRLKRHAGVHRETLPYSCEICKYRFKTANQLAGHKASHDGGKLMEKLPPPEGYKCPDCPRRFEKSNSLAAHTRVHRKPDPNQIFKCCLCPKRFRKITTLSQHALTHPENQKQQKDLQHKALAEETEKFNGVHDPLSIKTETNDEALNESVLLESTYLNKMDMDSEWSDGDDIKHLENNTSTDPNSADNVDCQMKTLSKERKTEQNAFTPNINDTADETRVNTIEKPNAQFNRKYNFCCEKCDAAFSCNDKLQKHFRVHLQANPFVCEICNYRFKRISSLSYHTAVKHETVPPDGFKCPDCPRRFEKSDSLRRHTISHQKMLPDQCKFKCNLCPKKFQNLSSLTQHARLHPENKKFKCTSCEASFSLSSKLENHMHKHNGLYICEHCKKGFKKKIVLKEHLRIHTGERPYLCPQCGKSFRTSSGLADHRKRHSNIKPCQCTECPRTFSCHSDRIKHMRVHRDIKPHSCDICGSRFTRANSLREHMAIHTGERPHKCDECSLKFVCKFKLKRHQRSHTGDKPHKCKLCEKAYALKGDLTKHMRIHLGDKTYFCEECPEKFKYQKELLSHQSAHFKQKKIESLNDMQKNVEESTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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