Csim039030.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calliopum simillimum
Gene Symbol
-
Assembly
GCA_951812925.1
Location
OX638372.1:109779683-109787844[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0016 0.19 13.5 2.0 1 19 255 273 255 277 0.95
2 18 5.6e-05 0.0067 18.0 0.4 1 23 283 306 283 306 0.98
3 18 0.00086 0.1 14.3 5.5 1 23 314 336 314 336 0.98
4 18 0.00019 0.022 16.4 0.7 2 23 342 363 341 363 0.97
5 18 0.35 42 6.1 7.8 1 23 434 456 434 456 0.96
6 18 0.0044 0.53 12.1 0.9 1 21 462 482 462 485 0.88
7 18 1.2e-06 0.00014 23.3 0.4 1 23 493 515 493 515 0.99
8 18 0.00027 0.032 15.9 2.4 1 23 521 542 521 542 0.98
9 18 0.0012 0.14 13.9 0.2 1 22 599 620 599 620 0.96
10 18 0.0072 0.86 11.4 5.5 1 23 626 648 626 648 0.99
11 18 0.0016 0.19 13.5 1.0 1 23 654 676 654 677 0.95
12 18 3.5e-05 0.0042 18.7 0.9 3 23 683 703 682 703 0.97
13 18 1.9e-05 0.0023 19.5 1.8 1 23 709 731 709 731 0.95
14 18 0.0028 0.34 12.7 0.9 1 23 737 759 737 759 0.98
15 18 0.00036 0.043 15.5 3.7 1 23 765 788 765 788 0.96
16 18 0.0001 0.013 17.2 4.1 1 23 794 816 794 816 0.99
17 18 9.7e-07 0.00012 23.6 0.7 1 23 822 844 822 844 0.99
18 18 1.9e-05 0.0022 19.6 3.2 1 23 850 872 850 872 0.98

Sequence Information

Coding Sequence
ATGGACTTGAATCAAATGTGTCGTGCGTGTTTGGGGAAAAATCAAGACTTCCGCTCATTGTATGATCAAGCTGCGGCGGACAGAGCATTTACAATTTGTGAAATGTTTGCGTCAACAATACCACAAGTACCTGCCGTACATAGGAGCGATGAGCTCCCCAAATTAATTTGTATTACATGCTTAAATACAATGATTACCATCCATAAATTCCAAGAGATGTGTCTCGAATCGGACATATACATGCGAAGTGTACTGAGCAGTAGTAAAGTTTCATGCCATGAGCAATCAGAGGAGGAATTGCAAGGAGACGCGAAATTTGTTTATTCTCCGGAGGATCCACTTGAATTTTCAGGCgtgataaaaatcgaaaaaaaatatgataatgatAACATCAGAGATTCAAAATGGAGTGCTGCTGATGACAGACCTTTAAAGGATGCCATGATCCCGATAGGAGAGTTGGAAAATTGTATCAAAGTTGAAATCAGTGAAGTACAGGTACAAGAATGCGATATGGCGACATTGCTTGAGCCAAAATGTGAAAATATTGATGCCTATGACAAAGTAGAAGATTTAAATGCTGCTTGCAGCGACACCGCTTCGGAGTGGAGTTCCAGTGATAACAGTGATGACAATGAGAATCCAATGCGAAAAGTACGAAAAACAGAAAAGCAACCAACCACATCTAACAATATTACAGACGACGACACCAAAGTATATGAAATTGAAAAACCTAATTCACAACCTCGCCGCAATTATCATTTTCGCTGCCAACATTGTGATGCTGGCTTTACGAGCAACTACAAATTAAAGCAACATAGTCCCGTGCATCATGAGACGAATCCATTCGTTTGCAAAACATGTAGCTATCGATATAAAACATCTGGAGCACTTGCACAACACATTAATACCGCACATGAATTGTCACCACTCGAGGGACATAAATGTCCAAAGTGTCCAAGACGTTTTGAAAAACGTAAGTCTTTAGTATCGCACTTGTGCAGCCATCGCGATACACTTTTGAAATGTAAATGGTGTCCAAGACAATTTGCAAAGCTGAAAACACTGTTACGTCACGTGCGCATACATCCGGTATCTTCTACGGAGTGCTTTTCCTTCTGCCAGAAAAATATAGAATCTCGAGAGAAAAAACCTGAACTCGATAGTGATGATGATTTCGCGTGGAGTGCCGATGATGATATTagTTACTTCCCTGAGAAAGCACCTGTCGCCAACGAAACAACCCACGCCTCAGATGaaattgaaaaACCTAATTCACGCTCTcgcagaaaattaaattttcattgttcACATTGTGATGCTGATTTTGATAGCGATCACAAGTTAAAGCATCATGCTCGCTTACATCTCCTGGCACGAACATTTGCTTGTGAAATATGCAAATATCGCTTTACAACCGCTAAAACCTTGGCATACCACAATACACTAACACACGAAGTATCGACCACCGAAGGTTTTAAATGTCCAGAATGCCCAAGACGTTTTGAAAAACGGGAGTCTTTAGTGGCGCACATGAAAAGTCATCGCCagcaacaactttttaaatgcaatttgtgctcgaaaaaatttgataaaaaagatCTGTTGAATCATGCTCGCACACATTCAGAAAATAGGAAAACATATATATCAGAACTCCAAGAGAAATCAATGGTCGTAGCAAACAGAACAGAGCAAGAGGAGCACACTCCAAGTATCAAAAATGAAGCGAACGCTGAGGACATTACAAAACCCATAACCGCTAAACATGAAACACCACCACCACCTGATGGCTTTAAATGTCCAGATTGCCCTAGTCGTTTTGAAACACTTATATCTTTGACATCACATCGTATGACTAGTGAggtaaaatgtttcaaatgccgattttgtgcgaaaaaatttaaaaaattcacaacacTAACGCAGCATGAGCGCACGCATTccgaaactcaaaaatttaactGCAACTTGTGTGAGGAGTCATTTGAACTAAATACACAACTTGAAGGACATATAAATAAACATCATTTGAAGTTAAATATCTgtgaatattgtaaaaaagAGTTTAAAAGCAGATCTGGTCTTGAATTGCATGAACGCAAACATACCGGTGAAAAACCATTCCTTTGTTCACAATGCGGTAAATCctttaaatcaaacaaaactttGAGTGATCATTTGTTGCGTCATTCCggcttaaaaacttttcaatgtcCTGAGTGTCCGAGTAAATTTTCCTGCAGTGTTGATTTACGGAAACATGTACTTATACATCGAGGTACAAAACCACATGCCTGTGATCTTTGTGGACAGAGATTTTCACGTCATGATtcaataaataaacataaaaggACCGTTCACATTGGCAAGCGTCCGTATAAATGCGGTGAATGTGATATGACATTTGCTGTATTACAACATTTGCACCGTCATAAACGTACACATTCCGGAGAAAAACCCTATAAATGTAAATACTGTGAAAAAGCCTATGCCGATCGCGGTGATTTAACGAAACATTTACGTTTACACGTTGGTGAAAAAACGTACATGTGCGATGAAtgcccaaaaaagtttaaataccATACAGAATTGAAAGAACATCAGCGCCTTCATTACAAACAACAGCAGGGTAAGGCTGCTGTTGAAGAAAATGATTCGGAAAGCTAA
Protein Sequence
MDLNQMCRACLGKNQDFRSLYDQAAADRAFTICEMFASTIPQVPAVHRSDELPKLICITCLNTMITIHKFQEMCLESDIYMRSVLSSSKVSCHEQSEEELQGDAKFVYSPEDPLEFSGVIKIEKKYDNDNIRDSKWSAADDRPLKDAMIPIGELENCIKVEISEVQVQECDMATLLEPKCENIDAYDKVEDLNAACSDTASEWSSSDNSDDNENPMRKVRKTEKQPTTSNNITDDDTKVYEIEKPNSQPRRNYHFRCQHCDAGFTSNYKLKQHSPVHHETNPFVCKTCSYRYKTSGALAQHINTAHELSPLEGHKCPKCPRRFEKRKSLVSHLCSHRDTLLKCKWCPRQFAKLKTLLRHVRIHPVSSTECFSFCQKNIESREKKPELDSDDDFAWSADDDISYFPEKAPVANETTHASDEIEKPNSRSRRKLNFHCSHCDADFDSDHKLKHHARLHLLARTFACEICKYRFTTAKTLAYHNTLTHEVSTTEGFKCPECPRRFEKRESLVAHMKSHRQQQLFKCNLCSKKFDKKDLLNHARTHSENRKTYISELQEKSMVVANRTEQEEHTPSIKNEANAEDITKPITAKHETPPPPDGFKCPDCPSRFETLISLTSHRMTSEVKCFKCRFCAKKFKKFTTLTQHERTHSETQKFNCNLCEESFELNTQLEGHINKHHLKLNICEYCKKEFKSRSGLELHERKHTGEKPFLCSQCGKSFKSNKTLSDHLLRHSGLKTFQCPECPSKFSCSVDLRKHVLIHRGTKPHACDLCGQRFSRHDSINKHKRTVHIGKRPYKCGECDMTFAVLQHLHRHKRTHSGEKPYKCKYCEKAYADRGDLTKHLRLHVGEKTYMCDECPKKFKYHTELKEHQRLHYKQQQGKAAVEENDSES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-