Csim028907.3
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- -
- Assembly
- GCA_951812925.1
- Location
- OX638371.1:29367416-29377504[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00012 0.015 17.0 1.6 1 23 345 367 345 367 0.93 2 13 2.1e-08 2.5e-06 28.8 2.4 1 23 373 395 373 395 0.98 3 13 9.9e-05 0.012 17.3 0.8 1 23 401 423 401 423 0.98 4 13 3e-08 3.6e-06 28.3 3.9 1 23 433 455 433 455 0.98 5 13 3.6e-06 0.00043 21.8 1.6 1 23 461 483 461 483 0.98 6 13 1.8e-08 2.1e-06 29.1 4.0 1 23 492 514 492 514 0.98 7 13 3.6e-06 0.00043 21.8 1.6 1 23 520 542 520 542 0.98 8 13 6.6e-06 0.00079 21.0 0.9 1 23 548 570 548 570 0.98 9 13 4.5e-05 0.0053 18.4 1.4 2 23 661 682 660 682 0.96 10 13 5.5e-08 6.6e-06 27.5 3.0 1 23 688 710 688 710 0.98 11 13 0.066 8 8.4 3.9 3 23 718 738 716 738 0.98 12 13 7.6e-05 0.0091 17.6 1.4 1 23 744 766 744 766 0.99 13 13 0.025 3.1 9.7 1.1 1 23 773 797 773 797 0.95
Sequence Information
- Coding Sequence
- atggcgaTTAATTTTTCCGCTTCATTTGCCGCCTGTATCGCCGCTGGCCTTAAGGTACCTCGCCAAATTATGTACTGTATAACGCAGGATACGGGGCAACCGTACGTACTGTATAAAGACTCACAGGATGCTGAACGTAATGCTGCCGCATTGGGTGGCACCGCTGCTCAATGGGGTACTGATATGTATCCTGGTATACAACAGCAATCACAGACACATTTGTCAGCACAACAGAATGCACAAGGTGCCACACCACAAATACAAGCCGCAGCGCAGGCAGCTGCGGCGGCGGCTGCAGtggcacaacaacaacatcaacaacaacagcagggCCAACAACCGCACAGTCCAACCGGTGATCCGAATGTACGTGAAAATGGTGGCGGCGGTGCAGAAAGTGCGCGACAGCCACAACAGCAAGGATCACCATCAACAAGTCCATATCCGCCACAACAACGTACCAATGGTGGTGCTGGCGGACCCGATGAAGATGTTGCCATGAGTCAGTTACAGCAACAGCAAAGCAATCAGCAACAGAACCCATCGCAACAACAAAATCCAAACCAAAGTTCGAATGATccccaacaacaacagcatcagcaATCCAATCAACCACCTGGTGGCGATGGTAACGCTTCTGGTAATCCGCAGCATGTACAACAAAATGGTGGTCAACCTCAACCAAACGATCCCTCGAACAATTTTCAACCACCGCAGACCACAGACTTAAGCGGCTACTATGCGCCGCGTCATCCAGGCGCTGGTCCGCAAGGTGCAATGCTTGCACCGCCCGGCTTCCCACCGTTACACTATCTTAACAAGCCCTTGCCAGGAATGGCTGGTAGCATGGACCAAAATAGTGGACTGGAAGGTTATGCAATGCCAGAATTACTGCCCGGCGGTCAACAGGCAGCACAACAAAATGGCGGTGGTGGTCATGCCAATGGCACAGCCAATGGTCCAGGCCGACATTCAACACCAACGACGCCCAATACGCATAAATCATCAAAACCACACAGTGATTTGCGTCTATTCAAGTGTCTAACCTGCGGCAAAGATTTCAAACAAAAGAGTACATTACTGCAACATGATCGTATACATACCGATGCTCGGCCATATCCGTGCTCAGAGTGTGGCAAACGTTTTCGCCAGCAGTCGCATCTAACGCAACATCTACGTATACACGCCAACGAGAAACCCTTCACTTGCGCCTACTGTTCGCGTAGCTTCCGTCAGCGAGCAATACTGAATCAGCACATACGAATCCATTCGGaaaataccGATGACCATCGTCCCTTCCCGTGTTCCGAGTGTGGCAAGTGCTTTCGTCAGCAGTCGCATCTCGTACAACATATGCGCATCCACACCAACGAGAAGCCGTTCACATGCGCCTACTGTTCGCGGAGCTTCCGACAGCGGACAAATTTGGATCAACACATACGCATACATTTGGACAATGCCGATGGCCGTCCCTTCCCGTGTTCCGAATGTGGCAAGTGCTTTCGTCAGCAATCGCACCTTATACAACATATGCGCATCCATACCAACGAGAAGCCGTTTACTTGCGCCTACTGTTCGCGCAGCTTCCGTCAGCGGACAAATCTGGATCAACATATACGCATCCATTCGGGTGAGAAGCCCTACGCATGCCCTGAGTGCGGCAAGCACTTTCGCCAGAAGGCCATCCTCAATCAACATGTGCGCACCCACCAAGATGTCTCACCGCATCTCATCTTTAAAAATGGACCACATCCAACGCTGTGGCCACAAGACGTACCCTTTCCAGGTGATGAGACTGATACAAAGAATGACATTACAGGCGCTGGTGGGGGCTACCACGATGATGACTCGCAGAATACACCCGACGGCAGCGGAGGGATACACTATCCGGCGTACTTTAAAGATGGCAAGGGCCAGAAAATATTACCTGATGTCCTGCAGCATATCGGCATACGCCCGGCAAATATGCCACTCTACGTACGTTGCCCCATCTGCGATAAGGAGTTCAAACAGAAAACAACCTTATTGCAACATGGGTGCATTCACATCGAATCGCGTCCATATCCCTGCTCGCAGTGCGGTAAGCGCTTCCGTCAGCAATCACATTTGACACAACATCTACGGATACACACAAATGAGAAGCCGTTCGGTTGTTGTTACTGTTCCCGCTTCTTCCGACAGCGCACCATATTAAATCAGCACTTACGCATTCACACTGGCGAGAAGCCTTATAAATGTAATCAATGCGGCAAAGATTTCCGCCAGAAGGCCATACTGGATCAGCATACACGGACGCACCAGGTAGGAGATCGTCCCTTCTGCTGTCCCATGCCGAATTGCCGACGTCGCTTTGCCACCGAAAATGAAGTGACTAAGCACATCGACAACCATATGAACCCGAATGCGACGAAAAGGCCTCGccagaataacaacaacaacgttgCTTCCGCCGCAAATGTAGCAGCCTCTGCCGCTGCTGCCGCAGCTAATCATCTAATGAACGAAACAAAGAATCAGGCCCAACAATTTCTAAATAACAACAATCCCGGAGCAGCTGATAACAAAAATAGCATACTGCCGCGTTCTATGGCCGGTGGCCCCACCGTTCCGGGTCAACAGCAATCGATTGTCAAGAACGAACTCTATTTCCCGCAATGCTATGGACCACCTTTCCAACAGGCATTCGCTGCACAGCAGGGTCAACAACCGAGTGCAGCACATGCCAACTCACAGCCACCCGTCACAGTGACCGTGGCGAATTCAGTAGCACCCGGTGGTGTAGTACAACAGCCGGGTGGTACCTCAGTGGTGGCTCAGTGA
- Protein Sequence
- MAINFSASFAACIAAGLKVPRQIMYCITQDTGQPYVLYKDSQDAERNAAALGGTAAQWGTDMYPGIQQQSQTHLSAQQNAQGATPQIQAAAQAAAAAAAVAQQQHQQQQQGQQPHSPTGDPNVRENGGGGAESARQPQQQGSPSTSPYPPQQRTNGGAGGPDEDVAMSQLQQQQSNQQQNPSQQQNPNQSSNDPQQQQHQQSNQPPGGDGNASGNPQHVQQNGGQPQPNDPSNNFQPPQTTDLSGYYAPRHPGAGPQGAMLAPPGFPPLHYLNKPLPGMAGSMDQNSGLEGYAMPELLPGGQQAAQQNGGGGHANGTANGPGRHSTPTTPNTHKSSKPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPYPCSECGKRFRQQSHLTQHLRIHANEKPFTCAYCSRSFRQRAILNQHIRIHSENTDDHRPFPCSECGKCFRQQSHLVQHMRIHTNEKPFTCAYCSRSFRQRTNLDQHIRIHLDNADGRPFPCSECGKCFRQQSHLIQHMRIHTNEKPFTCAYCSRSFRQRTNLDQHIRIHSGEKPYACPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGPHPTLWPQDVPFPGDETDTKNDITGAGGGYHDDDSQNTPDGSGGIHYPAYFKDGKGQKILPDVLQHIGIRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCSQCGKRFRQQSHLTQHLRIHTNEKPFGCCYCSRFFRQRTILNQHLRIHTGEKPYKCNQCGKDFRQKAILDQHTRTHQVGDRPFCCPMPNCRRRFATENEVTKHIDNHMNPNATKRPRQNNNNNVASAANVAASAAAAAANHLMNETKNQAQQFLNNNNPGAADNKNSILPRSMAGGPTVPGQQQSIVKNELYFPQCYGPPFQQAFAAQQGQQPSAAHANSQPPVTVTVANSVAPGGVVQQPGGTSVVAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01201050;
- 90% Identity
- iTF_00972408;
- 80% Identity
- -