Csim015466.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- -
- Assembly
- GCA_951812925.1
- Location
- OX638369.1:20518446-20523498[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0058 8.3 7.8 0.6 19 44 251 278 249 278 0.83 2 12 0.005 7 8.0 5.5 9 38 266 299 261 300 0.79 3 12 0.18 2.5e+02 3.0 0.5 18 30 306 319 302 328 0.75 4 12 0.0032 4.6 8.6 1.7 6 29 323 345 321 356 0.75 5 12 0.0074 11 7.4 9.2 10 43 355 384 349 385 0.81 6 12 0.082 1.2e+02 4.1 0.4 19 38 392 412 390 413 0.86 7 12 0.00019 0.27 12.5 2.4 6 38 408 440 407 441 0.77 8 12 0.0012 1.7 10.0 5.1 18 38 447 468 441 470 0.92 9 12 0.0084 12 7.3 4.8 16 33 473 491 463 497 0.72 10 12 0.017 25 6.2 2.9 17 38 502 524 491 528 0.78 11 12 0.012 17 6.8 6.9 5 43 519 553 515 554 0.83 12 12 2.1 3e+03 -0.4 1.4 6 29 548 571 547 580 0.78
Sequence Information
- Coding Sequence
- ATGCCGAAAATTTGTGTAATATGCCGTGCCGTTGCCTCGAAAGACTCAAAGGATTCTTTTTTTTGCGTGCCTAAAGAAGAAGAAAGGCGTCAACGCTGGATAGAAAGCTGTGGCACGAACTTGAAAGAATCGTCTCACATTTGCCAAAATCACTTCAACCAAGCTGACTTCATCAATCCTCCTGGAACTAAAAAGTGCAGACTAATGCCTGCTGCACTACCAAAATCATGTTTAAATACACCTGCTTCACAAAGCGATGAAATCCTTGTTGTTGAGGCACCTGTTCCCCAAAGCGATGAAATGCTTGAGTTCACAGAAGAATGCGTGTTGACTCAACCACTTAAAATAGAGGTCGATAATGATACCATAAAAGTTGATGGGGATAGTGAATCAGatTTTGGAGAAGCATTTGGATCGACCCAACCAGTTAAAGTAGAGGTCGAAAATATTCCCTTAAAACTTGAGCGTAGTGAATCATctTTTACAAAAGTAGAGTCGCATGCATCGGATGCAGATATGACAGCTTTATATACTGAGTTTCCTGCCCCATATGTAGTGTTGGAAATTCAAACCCACACTGCTCTAACATACGATGATGATGTCAAGCCGCATTCTAATATAAAGCTTGAAGCACCTTCTATATGCTTAAACGGAAACATTAATGCATTCAGATCAGTTCTAAGTACGGTGTCTTTAAGTGATACAAGCTTGTCCGTAGAAAATCCTGCAACGGATCCATTAGGACTATTTTGTGGGATTTGCGGCAAAACTTTTGATCGAAAGCAACATTTCGCAAATCATATGCTCTGGCAGCACACAGAAACTTCTCATCCTTGTGATTactgtacaaaaacttttacacGCAGGGAACACTTGATTAATCATATGCGCCAACATACTGGTGAATCACCGTTTAGTTGTACTTATTGTCCGAAATCATTTAAGCGCAAGGAACATTTAGTTATTCATGTACGGAAACATACCGGTGAGACACCTTTCAAATGTACCTATTGTGAAAAAGCGTTCACTCGTAAAGATATCATGGTCAATCATGTACGCCAACATACTGGTGAATCGCCACATGTATGCACCTATTGTAATAAATCATTTACGCgtaaagaacatttaaaaaatcatgtGCGTCATAAACATACTGGTGAATCACCGCATTGTTGTTTGTACTGTCCAAAAACATTCTTGCGCAAGGAGCACCTGGTTAATCATATACGCCAACATACCGGTGAGACGCCTATCAAATGTACCTATTGTACTAAAGTATTCGCTCGTAAAGATCGCATGGTTAATCATATGCGACAACATACAGGAGATTCGCCACATAAATGCACTTATTGTAACAAAACCTATACACGAAAAGAACATCTAACAAATCATGTGCGTCAACATACTGGAGATTCACCACATCGATGCAGCTAttgtcaaaaaactttttcgcgCAAAGAGCATTTGACCAATCATATTCATCTGCATACTGGCGATTCTCCATATAAATGTGAATATTGTCAGAAGACGTTTGCGCGCAATGATCACCTGGAAAATCATATGCGCCAACATTCAAACGACAATTTACATTGTTGCAAtgtatgtaataaaaattttacacgcAAGGACCAACTGACCAATCATATGTCACGAACCCATACAAAAGATCGTCCGTTTGATTGCGAAACATGCGGCAAATCATTCGCATTAAAGGGAAATTTATTATTTCACCAGCGCAGCCACACTAAAGGAGAAGACTGTGAACGTCCATTTGCATGTGATACGTGTCCTAAAAACTTTATTACTAAAGGTTAG
- Protein Sequence
- MPKICVICRAVASKDSKDSFFCVPKEEERRQRWIESCGTNLKESSHICQNHFNQADFINPPGTKKCRLMPAALPKSCLNTPASQSDEILVVEAPVPQSDEMLEFTEECVLTQPLKIEVDNDTIKVDGDSESDFGEAFGSTQPVKVEVENIPLKLERSESSFTKVESHASDADMTALYTEFPAPYVVLEIQTHTALTYDDDVKPHSNIKLEAPSICLNGNINAFRSVLSTVSLSDTSLSVENPATDPLGLFCGICGKTFDRKQHFANHMLWQHTETSHPCDYCTKTFTRREHLINHMRQHTGESPFSCTYCPKSFKRKEHLVIHVRKHTGETPFKCTYCEKAFTRKDIMVNHVRQHTGESPHVCTYCNKSFTRKEHLKNHVRHKHTGESPHCCLYCPKTFLRKEHLVNHIRQHTGETPIKCTYCTKVFARKDRMVNHMRQHTGDSPHKCTYCNKTYTRKEHLTNHVRQHTGDSPHRCSYCQKTFSRKEHLTNHIHLHTGDSPYKCEYCQKTFARNDHLENHMRQHSNDNLHCCNVCNKNFTRKDQLTNHMSRTHTKDRPFDCETCGKSFALKGNLLFHQRSHTKGEDCERPFACDTCPKNFITKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00258191; iTF_00257886;
- 90% Identity
- iTF_00258191; iTF_00257886;
- 80% Identity
- iTF_00258191; iTF_00257886;