Csim024619.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calliopum simillimum
Gene Symbol
-
Assembly
GCA_951812925.1
Location
OX638370.1:59212478-59214919[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.2e-09 2.8e-06 28.2 0.0 3 38 8 44 6 50 0.88

Sequence Information

Coding Sequence
ATGTCTGCAAACTACACGAAAGCAACTCTTGAAAAGGCACTAGAAGAAATCGGGAATAAATCTTTGTCAGTATATAAAGCGTCACGACTATATAAAATACCAAGGCAAACTCTTTacgataaaattaataaaaaatacaacaaagagTCTCCTGGAGCACCATCCATTCTCACCCGACAAGAAGAATCGTTAATTGTTGCATGGATAAACCAAATGACTCAAATTGGATTTCCAATAACTAAAGATTTATTGTTACATTCCGTACAAAAACTTGTGACAGAACTTGGTCGACCAAACTCTTTCAAGGAAGGTTTGCCTGGGCGTCATTggtatgaaaattttatgcGAAGAAACCCATCGATCAGCAAACGAATTTGCCAGGTACTTACTACAGCACGCGTTTCAGCTAATGAAGGAAAAATCAGAAATTGGTTTCAGACTGTCAAACagtattttgaagaaaacaatCTTCTTGAAGTATTAGAGGATCCTTCTAGAATTTTTAACTGCGATGAATCGGCATTTTTCCTTTGCCCTAAGGGTCGTGCTGTTTTGGCAAGAAAAGGTTCAAAGGCTGTGTATTGCAGATCTGGAAATGATGAAAAAGAATGTCTCACGTTGTCGCTTGGTGCATCTGCAGATGGAAAATTAATGCCATGTCTTGTATTATTTCCTTATAAACGGATCCCTCAGAATATTCTAGCGAAATATCCAAAAGACTGGTCAATTGGAAGAAGCGAATCAGGATGGATGAACTGCGAAGCTTTTTATGAAtatattgcaaatgtttttaatcCATATTTAATCAAAGAAGGTATAAAGAAGcctgtagttttatttttagacGGCCATGTCTCCCACTTATCGTACCATGTAAGTCAATTGTGTAAAGACAATGATATAATTTTGGTCGCTTTGTTGCCCAATTCCACCCACATATTGCAGCCTATGGATGTAGCAGTATTTCATAGTTTGAAAAACAACTGgagcaaaaatgtttacacTTGGCGTATGCAAAATAATGGCGCTCGTATGAAACGAGAAGATTTTGGACCAGTCCTTGAAAAATCTATTGAGTCTTCATTAAGAccagaaatagtaaaaaatggaTTTCGAAAGTGTGGGTTGTATCCTTTTGATGAAAACGCCATCGACTATGATAAATTACTGAAAACTACGACTAATTCTGGTTTGGATTATGAAGAAGCTATTCCACTGGAAATTGGTTCTTCTATTCAACTGCAGCTGAAATCAACATCAGAAGAATCAAATAAATATGCAAAATGGTTTGAGGAGCTTTTAGGAGTCCAAAAATTGAATACTTTTGAGCACTGTGTAGGAGAGTGGAACGGAGATGTCAAAGATGAAAATTTATACTACTTTTGGAAAAACATAAAAGAGAACCATTCAGATAGAACATCATTTACTCCGGATTCAATGAGTTTAGGTGAAAAAACTTTACATGCAAATGATTGTTCTTTATCCAATATAAATTTAGGCTGGCTGActgatataaattttatggaGATGGTTATAGATGATGACAATATTTTAATACCAAGCTCAACTCCAAAAACCCCTCAAAAACTTGGTATTgaagaaaatatcgaaaaagaacCAAATATTGCTCATTTTTCGATAAATCCTAATCCAGTTGAACTAGAACATGATGGCAACAACATATTAATACCATGCTCAACTCCGAAAACTCCTCAAAAACTTGGTATTgaagaaaatatcgaaaaagaacCAGGTATTGCTAAAATTTCGACAAAACTTAATTCAGTTGAACCAGAAACTTCTGCTTTAAATACAACAAGCCAATCTAAAGATATTAAATCGAAATTTCCGACTCcatttaaaaatgcattattttgGCCAGAGACCCCAAcgacttcaaaaaaaaatattaaaaaaaggctGGTTCCGACAGTTGTAACGGCAACCGAACATATCGAATACCAAAGACGGTTAAAccaagaaaagaaagaaaagattGATAAAGCTGAAGTAAGAAAACAGGAACGTGAAAATAAAAAAGCCAGAGTAGAggaaaaatacaagaaaaataaaaatgtgacagtcccgaaaaagaaaaaagaaagtgCAAAAGCCAGATGCGAAATGTTACCAAATGAAAGAGTTCAGAGAAACGATTGCATTAAACATATTTTAACAATCACTTCAGGAGAACATGTAATTGTTACCTACGAAGAAGAGAAATTTCCCGGTGTTGTGATGAGAGTACTGGATAATAAAAGCGGCCTAAAGTACGAGGTGAAGACCATGATAATGAGTTCCTTTGTGAATGGCCGGATGAATTGGCGGTGGCCCGAAAAGGATGACATTTTAGAATATGATCCAACCGAtgtcgtaaaaaaaattaaaccccCACTTCCAGTCAACAAAAGAGGTGTTTTTTATATTCCAGACTTCGAGTAA
Protein Sequence
MSANYTKATLEKALEEIGNKSLSVYKASRLYKIPRQTLYDKINKKYNKESPGAPSILTRQEESLIVAWINQMTQIGFPITKDLLLHSVQKLVTELGRPNSFKEGLPGRHWYENFMRRNPSISKRICQVLTTARVSANEGKIRNWFQTVKQYFEENNLLEVLEDPSRIFNCDESAFFLCPKGRAVLARKGSKAVYCRSGNDEKECLTLSLGASADGKLMPCLVLFPYKRIPQNILAKYPKDWSIGRSESGWMNCEAFYEYIANVFNPYLIKEGIKKPVVLFLDGHVSHLSYHVSQLCKDNDIILVALLPNSTHILQPMDVAVFHSLKNNWSKNVYTWRMQNNGARMKREDFGPVLEKSIESSLRPEIVKNGFRKCGLYPFDENAIDYDKLLKTTTNSGLDYEEAIPLEIGSSIQLQLKSTSEESNKYAKWFEELLGVQKLNTFEHCVGEWNGDVKDENLYYFWKNIKENHSDRTSFTPDSMSLGEKTLHANDCSLSNINLGWLTDINFMEMVIDDDNILIPSSTPKTPQKLGIEENIEKEPNIAHFSINPNPVELEHDGNNILIPCSTPKTPQKLGIEENIEKEPGIAKISTKLNSVEPETSALNTTSQSKDIKSKFPTPFKNALFWPETPTTSKKNIKKRLVPTVVTATEHIEYQRRLNQEKKEKIDKAEVRKQERENKKARVEEKYKKNKNVTVPKKKKESAKARCEMLPNERVQRNDCIKHILTITSGEHVIVTYEEEKFPGVVMRVLDNKSGLKYEVKTMIMSSFVNGRMNWRWPEKDDILEYDPTDVVKKIKPPLPVNKRGVFYIPDFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00257746; iTF_00257747;
90% Identity
-
80% Identity
-