Csim026857.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- -
- Assembly
- GCA_951812925.1
- Location
- OX638370.1:110470219-110470674[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-09 2.7e-06 28.2 0.0 4 38 17 51 15 57 0.89 2 2 2.7 6.3e+03 -1.8 0.0 26 31 93 98 88 98 0.79
Sequence Information
- Coding Sequence
- ATGCCACGCGGTAACAAAAAACAACGACGAATGCCATTCAATAAAAATGACTTATCGTCGGCCGTAAACGAAGTTATGCAAAATGGTTTAAGTGTTAAGTCTGCTGCTAAAAAGCACAATATCGCCAAAACAACTTTATTGCGACATTTATGTAAACATCAAACTTCTGGAAGCACAACTTTTGAATACGAGTCTAGAATTGATCATAAAAAAGTGTTCAGCAAAGAGGAGGAAATATTGTTGGTTACGTTTATTGAAACCGCCGCAAAATTACAATATGGTATCTCCAAAACAGAGGCCATGAAACTGGCTTATCAATTTGctgagaaaaacaataaaaagtttcccAAAAGCTGGATTGACAACAAGACCGCTGGCAATGGCTGGTTtaatggatttttgaaaagaaatccGATTGTATCATTGTGGATGCCGGAAGTAGTCACTGGTATGTGA
- Protein Sequence
- MPRGNKKQRRMPFNKNDLSSAVNEVMQNGLSVKSAAKKHNIAKTTLLRHLCKHQTSGSTTFEYESRIDHKKVFSKEEEILLVTFIETAAKLQYGISKTEAMKLAYQFAEKNNKKFPKSWIDNKTAGNGWFNGFLKRNPIVSLWMPEVVTGM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -