Csim021251.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- bab2
- Assembly
- GCA_951812925.1
- Location
- OX638370.1:1483626-1485934[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-11 8.8e-08 33.0 0.0 3 45 422 464 420 464 0.90 2 2 2.7 6.3e+03 -1.8 0.7 4 20 558 573 558 573 0.88
Sequence Information
- Coding Sequence
- ATGGGTGGGCCGCCACCACCACTACTTCCGCCCACATCCACAGAAGGGCAGACTTATTGTCTGCGATGGAATAATCACAAATCAAATTTGGTCGAGATACTCGATGCTCTCATCAAAGTCGAGAGTTATGTTGACTGCACAATTGTGGTTGACGATCAGGTGCAGTTTAAGGCGCACCGTGTTGTACTCGCTGCAAATTCGCCATATTTCCAGTCAATTCTGCAGGACGTGCCAATGGATCACTGCAGTATAATTTTTCCCGGTGTCAAGGCGTTTGAAATGCGTGCACTATTAGAGTACATGTACACTGGTGAGGTCAATGTCACTCAAAGTCAAATACCGAAAATAATGCGCATCGCGGAGGAGCTCGAAGTAAAAGGTCTTTTCGACATGGCCGACCTGAAggagaaatttaacaaaatgagTGACGAGAATGCTGAGCGTGCTGGGAATCCGTATGCTACTTCAACAGCTCCAAGTATACCTTATTCGTCGGCTGCCACTTCATCCACAACCCCTCAAAATGGCGCAGGCAGTGGAGCTAAGGAGCATCATCTTACAGAAGCCATGAATTCCTCATCAGTGATCTCAACATCAAGTAATATATCACCTTCAGCTGCACCCACAAGTAGCTCTTCGCCGCCATATAATAGCTACAAGTCGCCATATTCTAATTTATACTCGAAATCTCCCGGACCCTCTGCTACAACTGCTGCTCAAACGTCGGCGACAACACAGTCAGCTGCTCATCAGCAATCACAGCCAGGCCCCAGCGGAGGAGAACGTGGCCAATGGCCTCTCTCACCCGTTATGCCATCagccgctgctgctgccgccATGTTGAGCTCCGTATATGAATCCGCACCTGATATGAATCCACTAAAGCGCAAAAAGCTTTCGTCGATCTCAAGTATGTTAATGAATCGGGACACGCCAATACTGCGCAACGTTTTGGCCCAGAGTAACCCAGCCGATTCCTCGCAGCCAATGCCACTTATGTTGCCAGCTTCTAAGCCAGAGAAGTCTGCAGCGGAAAAATCATCGCTGCAAGCCACCGCTACTGGGGTACACAACAATAATATCAGCTTCAACGGTTCAGATTACAGTAGTGATAAGAAGTACCCGGATGAACCACATTCACCTTACACAGATCGTTCATTTGACGATGATGGATTTGATCCTAAAGGTAATTTTGGTGGTAACTTTGGTTCCAGCTCGAATAATCAAAAACCGGAGTGGAAACGTTACAAACAGTATACACGGAATGACATTATGTCAGCCATACAGTGCGTTCGTGATGGTATGAGCGCTCTGCAAGCGTCACGAAAGTTTGGTGTTCCCTCACGAACCCTCTacgataaagtaaaaaaattaggtATAACCACTGGAAGACCTATGAATCGCACAATGAAACGTAGTCCTAGTAATGTTGAATCCTCAGCTGCATTCCCCTACTCACATGCCTATGGTCAATCCGAGCCATTGCTAGCGTCAATGCATGATGGTCGCGATGAACGCGATCATGTTCCTAAAGAGCATCACCGCTCTGATCACCATATGCCTCCCACCATTCCACATCATGCAGCTGCGCTACTGGACCATGCCTTTTTGCAGCAAGCGCTAGAAAATAGAGGCGGTGATATTGCCGGTCGCGAAGCTTTACATGCTATGGCGCTGGCTGCCGCTGCTCATGCTGCTGTAAATCGCATGTCCACGAGCCCAGGACCAAATGGCAATGCAGCACGCTCACCTAGTCccaatttttcaatgaaatatgCGCGTTCTGAGCATGAATTAATGCTAGAACGCGAGAAAGAACGTCGTATTTTTGATCGAGAAATGGAGCGTGAGCGTGAATTAGTGGAAATTGAACGCGAACATAACCGCGAGAGGGAACATGGGCGCGATCACGAACGTGACGCGGACGATGAAGATGATCAAGTTGAAGATCTGTCCGTAGCACGGAAAGACTGCATCTCGCCAGAAGAGCACAGAAGACCTGAAACACCATACtcgccgccaccaccaccaccaaccgCAACGACAGCTGTTGGAGGAGGAGGTGAAATCGGTGGAAGTGGTGTGATTATGCCACCCATGAGTGCTGTGGCAAAACTGGCGGCAACAGGCAGTGCTGACCTTTTGATCAGCGAAAGTGCTATGAAACGAGAAATTATAAGCGACGAAGGACGTGCCGACTGA
- Protein Sequence
- MGGPPPPLLPPTSTEGQTYCLRWNNHKSNLVEILDALIKVESYVDCTIVVDDQVQFKAHRVVLAANSPYFQSILQDVPMDHCSIIFPGVKAFEMRALLEYMYTGEVNVTQSQIPKIMRIAEELEVKGLFDMADLKEKFNKMSDENAERAGNPYATSTAPSIPYSSAATSSTTPQNGAGSGAKEHHLTEAMNSSSVISTSSNISPSAAPTSSSSPPYNSYKSPYSNLYSKSPGPSATTAAQTSATTQSAAHQQSQPGPSGGERGQWPLSPVMPSAAAAAAMLSSVYESAPDMNPLKRKKLSSISSMLMNRDTPILRNVLAQSNPADSSQPMPLMLPASKPEKSAAEKSSLQATATGVHNNNISFNGSDYSSDKKYPDEPHSPYTDRSFDDDGFDPKGNFGGNFGSSSNNQKPEWKRYKQYTRNDIMSAIQCVRDGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRTMKRSPSNVESSAAFPYSHAYGQSEPLLASMHDGRDERDHVPKEHHRSDHHMPPTIPHHAAALLDHAFLQQALENRGGDIAGREALHAMALAAAAHAAVNRMSTSPGPNGNAARSPSPNFSMKYARSEHELMLEREKERRIFDREMERERELVEIEREHNREREHGRDHERDADDEDDQVEDLSVARKDCISPEEHRRPETPYSPPPPPPTATTAVGGGGEIGGSGVIMPPMSAVAKLAATGSADLLISESAMKREIISDEGRAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00972114;
- 90% Identity
- iTF_00972114;
- 80% Identity
- iTF_00258037;