Csim027443.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- -
- Assembly
- GCA_951812925.1
- Location
- OX638370.1:121960371-121962069[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.2e-06 0.0075 17.2 0.0 4 38 20 54 20 58 0.87 2 3 8e-06 0.019 15.9 0.0 4 38 92 126 92 131 0.91 3 3 5.4 1.3e+04 -2.7 0.0 30 37 440 448 440 450 0.79
Sequence Information
- Coding Sequence
- ATGTCGACCCCAAATAAATCGAATAAATCGTCTGATTCGAAGGGAATTGATTTTTATGCGCTGATCGAAGctatcaaaaaatgcttggtgGAGAAACAACCCATAAAATCGACTGCTAAATTGTATTCTATTTCTCGAACCACTCTTCAACGCTACGTGAAGAAAGTAAAAGATAAGTTTGGTGACGTCGAAGCCATTGACGATGGTATTTTGTTGGATTTCGTGCGTCATAATTCAAAGAAATCTTCGGATTCGAAAGGAATTAATTTTTACGCGTTGATCGAAgctatcaaaaaatgtttggtagAGAAGCAATCCGAAAAATCGACTGCTAAATTGTATTGCATTCCTCGAACGACTCTTCAACGCTACTTGAAGAAAGTGAAAGAAAATTTCGGTGGTGTCGAAGCCATCGACGATGGTATTCTGTTGGATTTCGTGCGTCTATGCGGTCAACGCGTGCCGAGAAATCAGgttttcTCGGGGGCCCAAGAGAACGACTTGGTCACGTACGTTTCGAAATGCGTGAAGCATTATTACGGGATCAGCATAAACGAGTTGCGCGAGTTGGCTTACCAGTTTTCAAAAAAGCTCGGTGTTGAGTTTTCGGACAGTTACTCCGAGGGACAGATGGCTGGTATGGAATGGTACCAAAAATTTATGCGACGGCACCCCCAACTCTGTTTGCGAACCCCTGAACAAACGTCATTAAATCGCGGTAAAGCTTTCTGTAAGACAAACGTAAAGAACTTTTTCGACCAACTCGGTGCTTTGTTGGATGAGTATCATTTTCCTGCTACGCACATCTACAATATGGACGAGTCAGGCTTTTCAACCATTCCAACAAAAATTGGCCGAGTGATCGCCATGAAGGGCGTGCGGCGTATTGGCAAGGTCGAGGAAGCTATACGCGGCACCGTGATTACCATGGCGTTGACCATCAATGCAAATGGGAATAGTCTgcctcctttttttttgtttccaacaAAAACCATGCAAAGCTGCTTTTTTGAAAATGCATCTTCAGGATCCGCCGGCTATGCAAATGATTCTGGGTTGATGGCTCAAAAGGAATTCGTTCGTTACATGCGTCATTTCATTCAGTTTGCGGAACCGTCGCCAACTTCCCCTGTTCTGCTGCTTCTGGACAACCACACCAGCCACTTGTCGATAGAAGCGCTAGACATTGCTGTCGCTAATGGGGTGCACTTCCTTTCGTTTCCGCCGCACTGCAGCCATCAGCTGCAGCCTTTGTCTGTCTCTGTGTTGAGACCGGTGAGAGCATTTTACAAGGCACAGTATGCAGCTTGGCAAAAGAACAGTACCTTGGAAATGCGTCACTTAGCCGGattaatctgcaaaacacttgatctggcattgacgccgaagacaatcatgTCTGGTTTCCAGGCAACGGGTATCATGCCATTCAATCCAAAtattttcagtgacgctgatttcgTTAAAGCCATTGAGCAGAACACAGTTGAAGCTGCCAAAGAGAATAAAATAGGCGAGAAAGATCAGCGCCGCATCATAGTAGAGCTGTACCCACCTGTTGGTCAATTCGAAGATGTTGTCAAGGAACCAGAGCCGTCTTCCGTTTTCCCCACCAATCAGTGA
- Protein Sequence
- MSTPNKSNKSSDSKGIDFYALIEAIKKCLVEKQPIKSTAKLYSISRTTLQRYVKKVKDKFGDVEAIDDGILLDFVRHNSKKSSDSKGINFYALIEAIKKCLVEKQSEKSTAKLYCIPRTTLQRYLKKVKENFGGVEAIDDGILLDFVRLCGQRVPRNQVFSGAQENDLVTYVSKCVKHYYGISINELRELAYQFSKKLGVEFSDSYSEGQMAGMEWYQKFMRRHPQLCLRTPEQTSLNRGKAFCKTNVKNFFDQLGALLDEYHFPATHIYNMDESGFSTIPTKIGRVIAMKGVRRIGKVEEAIRGTVITMALTINANGNSLPPFFLFPTKTMQSCFFENASSGSAGYANDSGLMAQKEFVRYMRHFIQFAEPSPTSPVLLLLDNHTSHLSIEALDIAVANGVHFLSFPPHCSHQLQPLSVSVLRPVRAFYKAQYAAWQKNSTLEMRHLAGLICKTLDLALTPKTIMSGFQATGIMPFNPNIFSDADFVKAIEQNTVEAAKENKIGEKDQRRIIVELYPPVGQFEDVVKEPEPSSVFPTNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -