Csim033179.2
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- bab1
- Assembly
- GCA_951812925.1
- Location
- OX638371.1:115900999-115902833[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-17 5.1e-14 52.9 0.0 1 43 56 99 56 101 0.95 2 2 6.6 1.5e+04 -3.0 2.2 4 22 200 221 197 224 0.64
Sequence Information
- Coding Sequence
- ATGCTGGAAAACTCACACTCTTGGATGGGTGCCGCCTCAACATCTTCTATTGCAGCAGACAGCTATCAATATCAATTACAATCAATGTGGCAAAAATGTTGGAATACCAATCAAAATCTAATGCATCATTTGCGATTTCGTGAACGTGGTCCTTTAAAATCATGGCGCCCTGAAACTATGGCAGAAGCAATTTTTAGCGTACTCAAGGAGGGTCTCTCACTATCACAAGCAGCACGTAAATACGACATTCCGTATCCCACCTTTGTGCTCTATGCAAATCGTGTACACAATATGTTGGGTCCATCGATTGATGGTGGACCCGATTTGCGTCCCAAGGGGCGTGGACGTCCACAACGTATACTATTGGGTATTTGGCCAGATGAGCATATAAAGGGTGTCATCAAGACTGTGGTCTTTCGTGATGCGAAAGATCTTAAAGATGAGGGTCTTACACACTTGCAATATGGCAGACATTCGCCCGTATTCCCCTTCCAAGAGGGACATCTCAACTATCCAGGCGTCAGTGGCATTGGTGGCCCAGTCGGCCCTTGTCCTAATGGCATGCCCACACCTACAGGAGATCAAATGTCTCAAGAAGCTACCGCGGCTGCTGTAGCTGCAGTTGCGCACAATCTGCGACAGCAAATGCAATTGGCCGCCGCCGCCCAGCATCAACACCAACATCCTGAAGGTCCTGCAGCGGGTGGAAATCTTTTTAATATACCACCACATTTGCAGCCACATCTCGCAGCGGCAGGAGGTACACCTGGTCCGGGCGGTGGTCCACGAGGCCCTCTACCTGGTCCAGGCCCTGGCGGTATGCCATTACCAAAACAAAGTATTTCACCTGCATCAAGTTCTGCTCCAAATCCGGCTAGTTCCATGTTGGGCGGCCCCGGTATGCCAGGGCTTTCTAATTTACCACCAGGTATGGCTGCAGCTTTGCATATGgctggcggtggtggtggtggtccCATGCTGAGTCAGCAACAACATCAGTTACAACAGCtacatttgcaacaacaacatgcGATGCATCAACAtcagcaccaacaacaacaacaacattcacCTGCACATATGGCATTTCATTCATCAGCTGTAGCATCAACATCTGCTGCGGCGGCAGCACAGGGTACAGCTGCTTTGCATCGTcatcagcatcagcaacaacaacaacagcagcaacaacaacaagcttCAAGTTCATCCGCCCACCATCCTTCCACAGCAACACAAGAAACTTCGTCCAACAAACAGAAATCAATGATGCCAACATCACCACATCGTCGTCGGAGCAGCCCGTGTGGCACGCCCTCACTGCTTCATTCGCCGCTCACTGACTTGGGCTTGAGCGTGGCAGATTCCTCAGGTATGACAGTTGGTGTAAGTGGTATGACTTATAAACCTTCGCGTGGTTACTCTTCGCCACGTCCGGAACATCTTTTCCAAGAAGATATCGCCGAATTGGTAGGCGGTGTTGTTGGCATCGATAGTGGCggtgatggtggtggtggtggtagtgGTAGCACTGATACCTCAGTAACGCCCGCAACCGCAACAACCGTCACGGCATTGCCAGCGACAAGTACGGCATCCAGTGGtagcagcaacataaaaatcgaATTAGTTACGACAAGTAGTGAATGA
- Protein Sequence
- MLENSHSWMGAASTSSIAADSYQYQLQSMWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDLKDEGLTHLQYGRHSPVFPFQEGHLNYPGVSGIGGPVGPCPNGMPTPTGDQMSQEATAAAVAAVAHNLRQQMQLAAAAQHQHQHPEGPAAGGNLFNIPPHLQPHLAAAGGTPGPGGGPRGPLPGPGPGGMPLPKQSISPASSSAPNPASSMLGGPGMPGLSNLPPGMAAALHMAGGGGGGPMLSQQQHQLQQLHLQQQHAMHQHQHQQQQQHSPAHMAFHSSAVASTSAAAAAQGTAALHRHQHQQQQQQQQQQQASSSSAHHPSTATQETSSNKQKSMMPTSPHRRRSSPCGTPSLLHSPLTDLGLSVADSSGMTVGVSGMTYKPSRGYSSPRPEHLFQEDIAELVGGVVGIDSGGDGGGGGSGSTDTSVTPATATTVTALPATSTASSGSSNIKIELVTTSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00972113;
- 90% Identity
- -
- 80% Identity
- -