Csim030729.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- ttk
- Assembly
- GCA_951812925.1
- Location
- OX638371.1:60463591-60470608[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.9e-19 1.1e-15 58.2 0.0 2 45 608 652 607 652 0.97
Sequence Information
- Coding Sequence
- ATGTCAGTGCAACAATTCTGTTTGCGTTGGAACAATCATCAGCCGAATTTTATTTCGGTCTGTTCATCGTTATTGCATAATGGCACCCTTGTAGACGTTACACTAGCAGCGGAGGGCAGACAATTGCAGGCACACAAAATTGTCCTCTCTGCATGCAGTTCATATTTTCAAACCCTTTTTACAACGAATCCATGTCAACATCCAATTGTCATTCTAAAAGATGTGCAATATGACGATCTTAAAACTATGGTCGATTTTATGTATTACGGCGAGGTAAATGTATCACAAGAACAATTACCGCACATTTTGAAAACTgcggaaatgcttaaaattaaagGACTTGCAGAAATGCCAACCGATCCTGCCAATTTAACAAAATCCGATAGTAAGTCATCAAATGATCATACGGAATTAGTTGGTAGTGGAGCCTCTGGTAGTGGTGGATCTCAAGGAGGCGGCGTTGGTAGtggcggcggtggtggtggcggcggtCTTGGGAGTAGTACCGGTGGAAGCGGTAGTAGTGTTAGCGACTCACTTTGGGGCAGCACTGAATCacaatttcaacaacaacagcagcagcaacaccatcatcaccagcaacaacagcagcagcaacaacaacaacagcagcagcagcagcagcagcaacatcatcaccaccatcagcaacagcagcagcatcatcaacagcaacaacaaaatagccAAACACAAACAACTCAACAACATCATCAGCTAAGACGAACACCATCACCGTTGGGCGCAGGCGCTTCACCGGCGACACGCAGAAAGCGCTTAAGGAAATCATCAAATAATGGTTCCGGTGATCGAAACAATTCAGAAGATCAACACAGTACATCACTCGATCCAAGCAACACTGCCGGTGGCATAAGCTTATCGCAAATGAGTCAAATGTCATTTGGTGGTGGCTCCGGTGCTGGTAGCTCTTTAGGTGGCATTGGTGGACATTCATTGCATTCTGCGAAAATAATTAAAGAATCGACTAGCACTGATTTAGAATCACACCCACAAGATTCTGACAGTTTAGATGATGGACACGGACATGTGCATATGCAAATTAAACCTGAAGTAGACATAAGTGGTGTGCAACAATCAATTCCACTGGATATTTCTGGAGCCACAACACCATCCGAGCATGATGCTCCCAACTCACAATCTGCACATTCTGGTCTGCAATGGACGGTTGTTGATTCAAATTATTCACGATTTTCACTATCGTCTTGCCAACCCAATTTACTCGGTAATGGCAATCCAAATACGAATTCCACAAGTAGTGAACAACAGCGTCATCAGCAGCAGGATGCTAGCGGCGGCACTACAAAtagtcaacagcaacaacatcagcagcaacaacaacagcagcatcatTTGCAACAGCTTCAttttcaacagcaacaacaacaacaacaacagcagcagcagcagcagcaacaacaacaaaatgctaCATATACTTCACAAATAATATCAGTCAACAGTTTAGTCAGTGGGTATGCAGCTGCAGCAGCTGCACAAAATCTTTCACCAACCTCTCCGAATGAATCCAATATGGTGCAATCAGTTTATAGCCAAGGACCCACACCAACACAGTCACCAGTACATCAGTCAATAACTAGCGGTGGCGGCGGAGTTTCAAATGCTTCAACCGGTGCAAGCAGCGGCTCAAACATCGTCAATGCAAATGCACTTGCAGCGGCGGCAGCTGCTTCAGGTGGAAATGGTACAACAtccggtggtggtggtggtggtgtcgGTGGAAATGTGGTAAAACGTAAACGTTCTGTTAATCCACAAGGTGATGAAAACTTTATACGTGCATTGGAAGCTGTGCGTTCTGGTGGTATTGGATTCTGTAAAGCGGCGCGTCTTTATGGCGTAAATAATCGTACGCTTTGGCTGGAATACAAAAAACGTGGTTATCCCGTATCACGTCCTAGCATTAAATCGCGCATTGTCAAACAAGAACCGAATTTGTCGCCCTCACCTACGCCGCCCACCAATACAACTGACGATACCAACGAAAATTATGATCATATGTCGGCAGCTGCTGCAGTTGCTGCAGCACAAACTGCTGCGCTCAATATGCAAATACCACCGACATCGGATACACCGACACCATCGCTAATGTGTGCACCACATCATGGTGGCACACCAGGTTCTGGCGCACATCCAACAATGGGTGTAATGAGTTTTCTCGATACGCGCCACATGGATTTCCCTGCCAGCCTACACACGATGTCCAGGCAACGTTATATTGATGCAACTGGTACTGGCGGTAGTGGCGCCGGTGCTGGGACAATAAATGTTAATCCGGCAGCTGCAATGAACTTACAGAgtattaatttcaattcaatataG
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQTLFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSDSKSSNDHTELVGSGASGSGGSQGGGVGSGGGGGGGGLGSSTGGSGSSVSDSLWGSTESQFQQQQQQQHHHHQQQQQQQQQQQQQQQQQQHHHHHQQQQQHHQQQQQNSQTQTTQQHHQLRRTPSPLGAGASPATRRKRLRKSSNNGSGDRNNSEDQHSTSLDPSNTAGGISLSQMSQMSFGGGSGAGSSLGGIGGHSLHSAKIIKESTSTDLESHPQDSDSLDDGHGHVHMQIKPEVDISGVQQSIPLDISGATTPSEHDAPNSQSAHSGLQWTVVDSNYSRFSLSSCQPNLLGNGNPNTNSTSSEQQRHQQQDASGGTTNSQQQQHQQQQQQQHHLQQLHFQQQQQQQQQQQQQQQQQQNATYTSQIISVNSLVSGYAAAAAAQNLSPTSPNESNMVQSVYSQGPTPTQSPVHQSITSGGGGVSNASTGASSGSNIVNANALAAAAAASGGNGTTSGGGGGGVGGNVVKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKSRIVKQEPNLSPSPTPPTNTTDDTNENYDHMSAAAAVAAAQTAALNMQIPPTSDTPTPSLMCAPHHGGTPGSGAHPTMGVMSFLDTRHMDFPASLHTMSRQRYIDATGTGGSGAGAGTINVNPAAAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01415128;
- 90% Identity
- iTF_01486093;
- 80% Identity
- iTF_00257939;