Csim031441.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- br
- Assembly
- GCA_951812925.1
- Location
- OX638371.1:78969797-78973731[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-15 3.1e-12 47.3 0.0 2 44 347 389 346 390 0.96 2 3 0.01 23 6.0 0.0 25 37 417 429 398 435 0.80 3 3 4.4e-18 1e-14 55.2 0.0 3 42 457 496 455 499 0.92
Sequence Information
- Coding Sequence
- ATGAATCACCTTAAATGGATGGGCCACCAGAGCACCATCTATGAAATTCAGAAAAACCTACACAACGATTCACAAAGTTGTGAAGTGACTCTGGCTGGGAAAGGGAAATCGGTCCGAGCCCATCGTTTTGTCTTGTCCTCTTGCAGTGATATGCTGCGTGGATATTTGGCAGAGATACCCATTGGTCAAGAGACCACAATTATACTACCAGATATCAAGGGAGCCCTATTGGAAAGCGTTCTTGGCTTTATTTACATGGGTGAAACCTGTCTGAATTCCAATAATTTGTCCGAATTTTTGGAAGCTATCAATCATTTGGGAATTAAATCAGCCATCAGTTTTGAATGTAATACTGGGATGTTGTCAAGCAATGTAAGTGGGAGTGGAAACACTGATGATTGTTCTCCGTCAAAAGGAATTTCCAGCTCAATGCAAATAAATCAAGATGAAATTATTGAGGAAGAGCCAATGGAGGCATCGCCCAAAATGGAGGAACAAACCGTTATGGATGGCACTGATCAACAGGCGACAGCACGTGAATTGGAGTTTCTTGACGTATACAATGAGccacaacaaaaaattacatactCCATTGAGCACATGGCTGCTGCAACTAcaaatgaattcattttaaCTGAAAACTCTGGAACTTTCACACTTACACAAAATACAAAACTCGACGATCCCAGTATGACAGAAAAAATAGAGGTTGAACCTGAGGATGATGCTGACGATAGCCATATTCTAGAAGAGTATAGCGATACAGCTGAGCCCATAATTGAAATAAGCACCGCAAACAGCTCAGCTATCGCGGCAAGCGCTGGAAATGTTGTATCTGTCGCCAAGCCAACCCTTAttcatttaaaaccaaaaataaagatTGAGCGGCGTACTACATCACATCAGCAACAGCATCACccgcagcaacaacaacagcaagcaATGAATACCGATACCTCAGCAACGACAACAATGTCCAACATGCTAAATGCCGCCACTGATGGCTACGGCGGCGGATTTAATGATAGCCAATTGCGAGATGAAAACCTTGAAATGGCTGTTCAAGGGGTTCTCAACGAAGGTATGAGCTTgcagaaggccgcccaaaaatATCACATCTCAAAAACAGTACTTTGGAGACGCGTACGCAAACATCCCATGTATATGAAAACAGCACGTGAAAATCCACTATTGGAGGCTGCCTGCAATCGTCTTAGAAGTGGTCAATCGCTTAAGGTCATAAGCCAAGCGCTCGATATACCAATGTCAACATTGCATCGTCATAAAGTTCGCTTGGCTCAACAAGGACGTCTGCCAGattatatttcatttaagaaGCGTGGATCATTTTCAAAGGAGcaacttaaagaaaaacttgCAAAAGCAGTTCAAGCTTGTCTTCATGAAGGCATGTCGCAGAATCACGCTGCCAACTTGTACGAAATTCCAAAAAGTACGTTGTGGCGGCATCTGCAAAAACGTATGAGGGTAGCACAGATGCAATGTCTAGACGATGAGGAGGCCATTAAAGAGGAAATTATTTTATCCTAG
- Protein Sequence
- MNHLKWMGHQSTIYEIQKNLHNDSQSCEVTLAGKGKSVRAHRFVLSSCSDMLRGYLAEIPIGQETTIILPDIKGALLESVLGFIYMGETCLNSNNLSEFLEAINHLGIKSAISFECNTGMLSSNVSGSGNTDDCSPSKGISSSMQINQDEIIEEEPMEASPKMEEQTVMDGTDQQATARELEFLDVYNEPQQKITYSIEHMAAATTNEFILTENSGTFTLTQNTKLDDPSMTEKIEVEPEDDADDSHILEEYSDTAEPIIEISTANSSAIAASAGNVVSVAKPTLIHLKPKIKIERRTTSHQQQHHPQQQQQQAMNTDTSATTTMSNMLNAATDGYGGGFNDSQLRDENLEMAVQGVLNEGMSLQKAAQKYHISKTVLWRRVRKHPMYMKTARENPLLEAACNRLRSGQSLKVISQALDIPMSTLHRHKVRLAQQGRLPDYISFKKRGSFSKEQLKEKLAKAVQACLHEGMSQNHAANLYEIPKSTLWRHLQKRMRVAQMQCLDDEEAIKEEIILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00258134;
- 90% Identity
- iTF_00258134;
- 80% Identity
- iTF_00258134;