Basic Information

Insect: Calephelis virginiensis
Gene Symbol: -
Assembly: GCA_002245475.1
Location: NJDC01000127.1:36340-37407[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00053 0.047 14.8 0.9 1 23 55 77 55 77 0.98

2 9 0.095 8.4 7.7 0.0 2 20 103 121 102 122 0.94

3 9 0.00047 0.042 14.9 2.4 2 23 148 170 147 170 0.95

4 9 0.00069 0.061 14.4 5.4 3 23 178 199 177 199 0.98

5 9 0.007 0.62 11.2 0.2 2 23 205 227 204 227 0.95

6 9 0.035 3.1 9.0 3.7 1 23 231 254 231 254 0.96

7 9 0.0008 0.071 14.2 0.6 2 23 261 283 260 283 0.94

8 9 0.0017 0.15 13.2 0.2 3 23 291 311 290 311 0.95

9 9 0.00011 0.01 16.9 3.3 1 23 317 340 317 340 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00053	0.047	14.8	0.9	1	23	55	77	55	77	0.98
2	9	0.095	8.4	7.7	0.0	2	20	103	121	102	122	0.94
3	9	0.00047	0.042	14.9	2.4	2	23	148	170	147	170	0.95
4	9	0.00069	0.061	14.4	5.4	3	23	178	199	177	199	0.98
5	9	0.007	0.62	11.2	0.2	2	23	205	227	204	227	0.95
6	9	0.035	3.1	9.0	3.7	1	23	231	254	231	254	0.96
7	9	0.0008	0.071	14.2	0.6	2	23	261	283	260	283	0.94
8	9	0.0017	0.15	13.2	0.2	3	23	291	311	290	311	0.95
9	9	0.00011	0.01	16.9	3.3	1	23	317	340	317	340	0.97

Sequence Information

Coding Sequence: atgaaacattttgctATGGAATTTGATAGTGACGATAATTTACCAATCAAGGATCTCAAATCTTCGTTGTCACCTAACGACAGAATATTAACCGTAAGAAATAACATCATAGCAGTTGTTAAGCAGTCTACAATAATGCCATTTAGGTGGTTAAGAAGTTCTTAcagatgtttttattgttatgacGTTTTTAAAGAACCAAAAAATCTAAAAGACCACCAAATTGTTCATTCAGCCcaagaagaaattgaaaaagcTATGGAAAATTATTGGGATCAAGATGTATATGTGGATGTTTCTAGTATATCGTGTAATCTTTGTACTCAACCGACTACGGATTTGTATCAATTGGTTGAccatttaatatgttttcatgACCTTAAATTTAACAAAGATTACGGAATAGGCATGACACCATTTAGATTGGATGAACATACTGTTAGTTGTGTCATTTGTGATCACACATTTAGAACTTTTGGTCACCTTTTGGTGCATACTAATAAAGACCACAAAGGTTGGTCTAAAGTTTTGTGTGATACTTGTGGCCAACATTTTCGAAATTACACATGTCTTAGACAACACATTAGATCTACTCACACAAATGAAGGAGTTGAATGTCCAGTTTGTAGTTTGACGATCGCTAGTAAGAATAAATTAAGGACGCACTTGCAAAATTTCcataatcataaatataaatgtttcgcTTGCAACGAAAAATTCGAAACGCATTACAAGCGAACTCAACATATGATGCTAGTTCATAAAAGTAGAGACATAGTGGAATGTTCCtcttgtccaaagatatttgtttatcGAAGCACAATGATGAGGCATTTTAGAGAAACACATTTGCAGGAAAAAACTGCTATTTGCTCGGTGTGCGGATGGAAATCTTTTGGACTTTACGGTTTACAAAAACACATGATGAAACATAgtaatgaaagaaattttaaatgtcCTGCATgtgaaaaagcatttaaaaCAACGAAAACTTTGAAACAGcaccataaaaatatacaccaGAAAAATAGAACCTCTAAGGGTTGTGTTGATATTCACACGAAATAA
Protein Sequence: MKHFAMEFDSDDNLPIKDLKSSLSPNDRILTVRNNIIAVVKQSTIMPFRWLRSSYRCFYCYDVFKEPKNLKDHQIVHSAQEEIEKAMENYWDQDVYVDVSSISCNLCTQPTTDLYQLVDHLICFHDLKFNKDYGIGMTPFRLDEHTVSCVICDHTFRTFGHLLVHTNKDHKGWSKVLCDTCGQHFRNYTCLRQHIRSTHTNEGVECPVCSLTIASKNKLRTHLQNFHNHKYKCFACNEKFETHYKRTQHMMLVHKSRDIVECSSCPKIFVYRSTMMRHFRETHLQEKTAICSVCGWKSFGLYGLQKHMMKHSNERNFKCPACEKAFKTTKTLKQHHKNIHQKNRTSKGCVDIHTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -