Cvir011447.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- -
- Assembly
- GCA_002245475.1
- Location
- NJDC01003538.1:169313-170968[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.016 1.4 10.1 0.1 2 23 179 201 178 201 0.89 2 10 1.8 1.6e+02 3.7 1.8 1 23 207 229 207 229 0.81 3 10 0.65 58 5.0 1.0 1 23 235 257 235 257 0.95 4 10 0.0068 0.61 11.3 0.6 1 19 262 280 262 282 0.93 5 10 2.2e-05 0.0019 19.1 2.8 2 23 303 324 302 324 0.96 6 10 2.4e-05 0.0021 19.0 4.3 1 23 331 353 331 353 0.97 7 10 1.6e-05 0.0014 19.5 0.3 1 23 359 381 359 381 0.96 8 10 7.5e-05 0.0067 17.4 2.6 1 23 387 409 387 409 0.97 9 10 0.00017 0.015 16.3 2.0 1 23 415 437 415 437 0.98 10 10 7.4e-06 0.00066 20.6 3.1 1 23 443 466 443 466 0.98
Sequence Information
- Coding Sequence
- ATGAACGACAAAGAAAAATCTTATTGCCGACTTTGCGCcaacttaaaatcaaataataaactgATAAATCTCCTAGTTGATGAAGATAGAAGAAGTAAAATCATTGATAAGTTAATACGCTTCAATATTAGCATTGAGTTGTCTGAATCAATATTACCTAAAACAGTTTGTTTGCCGTGCATATCTTCTTTGGATAAAGCCTTTGACTTCATAATCGACGTGGAAAAAGCACAGGATGTCCTCAGAGACGTTATAATAcgtgaaataaaaacagaaactgCGCACACTGATGACTTTGCCTATTCACCGCAGTCACACAAAGACGATGGTGATTTCGCCTATTCGCCGCCTTCATCTGAAAAGTACGAGTTTAGCATTAAAGAGGAAATTGAAAACAGTAACGCGACAGCCAGTTTATCTGATGaaaggaaattgaaaaagatCAAAAAGGAGCGCAGAAAGGAGAGAGTGAAGTCAGATATAGATACAATACCATTATCTCAACTAAAATTGACTTGGAAGGATTACAGCTGGAAATGTGCCTATTGTGAAACAGAATTTCCAACAGTGGATGAATTACAAGAACATTCAATACAATACCATCAATGCTGCAATGCATACCGATGTAATGATTGTAATATTCGTAAGTTAAGGCTCGATAGCTTCTTATCTCATGTAAAACGTCaccgaaaatatttaaaattctcatGTTATAAGTGTTTTGAACGCTTCCCTAAAGCAATTGGAACACGGCTACATAAAAATGTACACAGAAAGTCAAATTTCATATGTACTGGATGTAATCATTCTTTTAGTTCCCCAGAAGAACAAACTCAACATAGCTCTGAGCTTAATAGAGATAAACGAGTCCGGCCAATACCAAAAATCCAGGATATGAATGATTTAACATGTACATTGTGTCATAAGACATTTAAATATAGAGGCAGTTTAAATACGCACCTACTAATACATACAGAGAGAAAAAGAGATCACACATGTGATAAATGTGGTAAGTGCTTCTTCAATAAACAAAACCTTGCTGGTCATATGCTATTACATGATGATGTTCGTCCATATCAATGTGAAATATGTAAATTCCGCTTTAGAACACCAGGACAACTAAGAATGCATGTTGGAGTACATGATAATATTAAACCTTTTTCTTGTGACCAGTGTGGAAGATGCTTTAGATTAAGTAAACAACTtgaatcacataaaataattcaCACAGATACTTTACCTTACACATGTCCATATTGTAGTAAAGGATTTAGGTTTAAAACCATTCTGAATCAGCACTTACGTCAGCATACTGGCGTTAAACCATATACATGTACATTTTGTCAGAGAGACTTTACAAATTGGCccaattataataaacatatgaAACGCAGGCACGGTTTGGATATGGCTAAAAAGAAACATACACCAGATGGAGTGTATCCTATTAATCCAACTACTGGAGAAATTGTAATACATGAAACAACACATAAAACTATAgaatggaaaaaaaaagtactagGTGGAAACAGAAGACCTGGAAGACCTAAACTCAGTAATAAGGATCCTATATTTGAGGCTATGGAAAATAAAGAAGATAAACATTCTCCACTGATGAGTGATGTGACACAGAATCAAGAAGAAATGGGAAAATGA
- Protein Sequence
- MNDKEKSYCRLCANLKSNNKLINLLVDEDRRSKIIDKLIRFNISIELSESILPKTVCLPCISSLDKAFDFIIDVEKAQDVLRDVIIREIKTETAHTDDFAYSPQSHKDDGDFAYSPPSSEKYEFSIKEEIENSNATASLSDERKLKKIKKERRKERVKSDIDTIPLSQLKLTWKDYSWKCAYCETEFPTVDELQEHSIQYHQCCNAYRCNDCNIRKLRLDSFLSHVKRHRKYLKFSCYKCFERFPKAIGTRLHKNVHRKSNFICTGCNHSFSSPEEQTQHSSELNRDKRVRPIPKIQDMNDLTCTLCHKTFKYRGSLNTHLLIHTERKRDHTCDKCGKCFFNKQNLAGHMLLHDDVRPYQCEICKFRFRTPGQLRMHVGVHDNIKPFSCDQCGRCFRLSKQLESHKIIHTDTLPYTCPYCSKGFRFKTILNQHLRQHTGVKPYTCTFCQRDFTNWPNYNKHMKRRHGLDMAKKKHTPDGVYPINPTTGEIVIHETTHKTIEWKKKVLGGNRRPGRPKLSNKDPIFEAMENKEDKHSPLMSDVTQNQEEMGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00144973;
- 90% Identity
- iTF_00256250;
- 80% Identity
- -