Basic Information

Insect: Calephelis virginiensis
Gene Symbol: -
Assembly: GCA_002245475.1
Location: NJDC01002940.1:125267-154428[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.001 0.09 13.9 0.8 1 23 136 159 136 159 0.95

2 10 0.66 59 5.0 0.1 1 20 239 258 239 260 0.93

3 10 0.12 11 7.3 0.9 3 19 290 306 289 309 0.93

4 10 0.053 4.7 8.5 0.2 3 21 332 350 330 351 0.93

5 10 0.011 0.99 10.6 2.1 1 23 363 385 363 385 0.98

6 10 2.1e-07 1.8e-05 25.5 0.8 1 23 392 414 392 414 0.98

7 10 0.00074 0.066 14.3 0.2 1 23 420 442 420 442 0.98

8 10 0.0027 0.24 12.5 0.1 1 23 448 470 448 470 0.96

9 10 5.1e-05 0.0046 18.0 0.1 1 23 534 556 534 556 0.98

10 10 4e-06 0.00035 21.5 0.7 1 23 562 585 562 585 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.001	0.09	13.9	0.8	1	23	136	159	136	159	0.95
2	10	0.66	59	5.0	0.1	1	20	239	258	239	260	0.93
3	10	0.12	11	7.3	0.9	3	19	290	306	289	309	0.93
4	10	0.053	4.7	8.5	0.2	3	21	332	350	330	351	0.93
5	10	0.011	0.99	10.6	2.1	1	23	363	385	363	385	0.98
6	10	2.1e-07	1.8e-05	25.5	0.8	1	23	392	414	392	414	0.98
7	10	0.00074	0.066	14.3	0.2	1	23	420	442	420	442	0.98
8	10	0.0027	0.24	12.5	0.1	1	23	448	470	448	470	0.96
9	10	5.1e-05	0.0046	18.0	0.1	1	23	534	556	534	556	0.98
10	10	4e-06	0.00035	21.5	0.7	1	23	562	585	562	585	0.97

Sequence Information

Coding Sequence: atgatgTTCGATCCACCCGATTTTCCGTACAAAGAGCTTGCAGACACATTAAGAGATGAATTAAGTTCTGATATTCTTTTGTACAACAGCACAACAGATTCTATCGATACTTTACATCAAGACAAAGATCCGGTTATAGTTACAGAAGCACTTATCTCAACAATAGAAAATCAGTTATCCCTTTCAAATCCTACTGAGAGATTTTTCAACTTAGATAATATGACTTTAGATTTTGATACCAATAAATCAAACTCAGAACTTTGTGTAATACAATCTGAAAGCTTCTCAAATTACGAGCCCACCTTGTTAGATGATTATACAGTAAATCAGTTTTTACTACCAATTGATGTTACAGTCCCAAATAAatcgACTGTCGATGACCATAGTACTGATTTATTGGCATTACACACTTGTGTCATTTGCCACGAGATATTCACTACGGACTCCGATCTCCTTGATCATACAATTTCGGCTCATGTTTCTGGCAATGTTTTTAATTACGATTCTACTACCTTAATTCCACTTACGACTGTAAAATCTTCTAAAGAAGATGAAAATACAAGCAGTTTTGATTTGGAGTGTGATTGGTTGGTCTGCTCCCTCTGCGAGCGTGTGCTCTCCACGGTGCTGGAGTCCGAACCTCGTGATGTGACAGACCAAGTATGTTGCACGGACGGGCCGAGCTGTGTGTCAGCACGGAAGCTCAGCACCATGTTCGTGTGCGACAACTGCAGCTACTTATTCGCCAGCGGGACAGCCCTGGATAGACACAAGCTGGCTTGTGGCAAGCAACAAGCAGAGAATTTTTATTCTGAACACGCGGAAACATCTCTATTGGATCAAAATGTTGAAGATTTGTTCTCCTTCTGCAATGCCTGTGGAAAACAGTTTCACAGCGAAGAAGATTTCAAAACTCATAGCTCCATTTGCCAGCGGCCCGCGGCCAGACAGCGTCGCCCGTACTCTACCGCCAGCACCAATAAGATGTGGAACTGCGCTTCTTGCAATCAGCTGTTCACGACGGCTCGAGAGCTATACCGTCATAAGCGTGGCGAGGATCGTCCCCCAGGAGAGCCCATGATGGCTTACGTTTGCGAGGAATGTGACAAGGTGCTGGGTAGCATGTGCGCGCTACACACTcacaaaaaaatgcacaaagtatCTAAACCTGGCTACCCGTGCCGCGTGTGTGGCAGACGCTTCAATCAGTCCGGACATTTGGCGATCCACATGAGAATGCACACTGGGGAGCGGCCTTACCCCTGTGACCTGTGTCCTAAGGCTTTTAAAGTAAAGGTGGAGCGCGACGACCACCGGCGGACACACACCGGCGAGCGGCCCTTCGCGTGCTCCGCCTGCCCCAAGACGTTCACGGCGGCGGCGCGCCTCCGCGAGCACGCTCGGATACACACCGATCAAAGgaaacagacagacaacaaTGTGGCGTTTTGCTCCATTCCCATTGGATCATCTGCCAGCTGTCACTACGGCCAGGACATATTTCATTTGGTTGCTCTTAGgtggtttgttttggttttaGTACGGTGTCTTGTTCTGGGCTGCACATCTGGGAATATCCATGTTGGTGTTGGAGTGCCCTATAAATGTGACATATGCGGAGCTGCCTTCCGCCGGCCGTACGCTCGAACAGTACACACGCTCATACACACTGGAGAAAAACCCCACGAGTGTGACGTCTGCGGCACTGCCTTTAGGCGTTCCGGCGATATGTGGAAGCACAAAAGAACAATACACACCATTCCGGGAAATGACGATGCAAATTAG
Protein Sequence: MMFDPPDFPYKELADTLRDELSSDILLYNSTTDSIDTLHQDKDPVIVTEALISTIENQLSLSNPTERFFNLDNMTLDFDTNKSNSELCVIQSESFSNYEPTLLDDYTVNQFLLPIDVTVPNKSTVDDHSTDLLALHTCVICHEIFTTDSDLLDHTISAHVSGNVFNYDSTTLIPLTTVKSSKEDENTSSFDLECDWLVCSLCERVLSTVLESEPRDVTDQVCCTDGPSCVSARKLSTMFVCDNCSYLFASGTALDRHKLACGKQQAENFYSEHAETSLLDQNVEDLFSFCNACGKQFHSEEDFKTHSSICQRPAARQRRPYSTASTNKMWNCASCNQLFTTARELYRHKRGEDRPPGEPMMAYVCEECDKVLGSMCALHTHKKMHKVSKPGYPCRVCGRRFNQSGHLAIHMRMHTGERPYPCDLCPKAFKVKVERDDHRRTHTGERPFACSACPKTFTAAARLREHARIHTDQRKQTDNNVAFCSIPIGSSASCHYGQDIFHLVALRWFVLVLVRCLVLGCTSGNIHVGVGVPYKCDICGAAFRRPYARTVHTLIHTGEKPHECDVCGTAFRRSGDMWKHKRTIHTIPGNDDAN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00256218;
90% Identity: -
80% Identity: -