Basic Information

Insect: Calephelis virginiensis
Gene Symbol: -
Assembly: GCA_002245475.1
Location: NJDC01002970.1:21083-29125[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.016 1.5 10.1 0.0 3 23 221 241 219 241 0.94

2 10 0.011 0.95 10.7 0.1 2 23 267 289 266 289 0.94

3 10 0.014 1.3 10.3 1.0 2 23 313 334 312 334 0.96

4 10 5.5e-05 0.0049 17.9 2.4 1 23 338 360 338 360 0.98

5 10 0.096 8.6 7.7 0.9 1 13 365 377 365 378 0.92

6 10 0.00015 0.013 16.5 1.8 3 23 398 419 396 419 0.95

7 10 3.5e-07 3.1e-05 24.8 1.4 1 23 426 449 426 449 0.98

8 10 0.0019 0.17 13.1 1.1 1 23 455 477 455 477 0.97

9 10 9.2e-07 8.2e-05 23.5 3.3 1 23 483 505 483 505 0.99

10 10 1.6e-05 0.0014 19.6 2.5 1 23 511 534 511 534 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.016	1.5	10.1	0.0	3	23	221	241	219	241	0.94
2	10	0.011	0.95	10.7	0.1	2	23	267	289	266	289	0.94
3	10	0.014	1.3	10.3	1.0	2	23	313	334	312	334	0.96
4	10	5.5e-05	0.0049	17.9	2.4	1	23	338	360	338	360	0.98
5	10	0.096	8.6	7.7	0.9	1	13	365	377	365	378	0.92
6	10	0.00015	0.013	16.5	1.8	3	23	398	419	396	419	0.95
7	10	3.5e-07	3.1e-05	24.8	1.4	1	23	426	449	426	449	0.98
8	10	0.0019	0.17	13.1	1.1	1	23	455	477	455	477	0.97
9	10	9.2e-07	8.2e-05	23.5	3.3	1	23	483	505	483	505	0.99
10	10	1.6e-05	0.0014	19.6	2.5	1	23	511	534	511	534	0.97

Sequence Information

Coding Sequence: atgaacatAATATCTTCATGTAGATGCTGCTTATCACAACCACCGGATAAAGATTTGAAAACTGCATACACATACAATAATGGAAAATCTGAAGTTTATGGAGATATGCTGAAAGAATGCTTCGAAATTAATCTATCTCTAGACATGTCTGATACTGAAAATGGAATTTGCGATGGATGTGTCAATCGTCTCCGTGACGCAGCAGACTTCAAACATCAAGTGCTGAAGTGTCAGAAAGAATTACATGATTTAGTTGAGAAAATTAAAGCCGAAAAAATACCATCTTTAAAAGAGGAGTACTTTGATATTGATGACCAAGAtgataacatgtattttttggAATTGAAAGAAGAAATAACAGAcatagaagaaataaaagaagatGAGAAATTAGCAGAAATACTGGGTCTTAAAGAGATTACTGTgaaaaagaaacacaaaaagactaaaaagacaaaaaagaaagatttgGAAGAATCGGattcGAAGTCAGACATCAACATCAATTCAAACCTGAGTTTATCATTtcaaagcttaaaaaaatacaaatttgatctcacttttttaagtgaaaataagaaacaccttctaaatattgaaaacattattaaatattcaaattgcacaccttttacaaataaaactttgcaAGGTATTATATGTGCTTATTGCAAAGAAATATACCCAACTTTGTTGGAATTAAGACAGCACATGGatggacataaaaaaatagaactttCAGATTGCAAACGTATGGACACAAacaatttatcaataaaaatggaTACAACCGATCTGAAATGTACCATTTGTGAtacaaatgtaaatgttttagCCGATTTAGAAAAGCACTTAGTAAAAGAACACAATATCAAATTCCATGAAGTAGAAAGCAATTATATATTAGAATTCAAGTTAAAAGATGGAGATATATTGAATTGTGCTCTGTGTAGTTCAACatttgaaacttttaaaatgCTTTTACAACATATGAATAGACATTACAGAAATTATATATGCGATGAGTGCGATATGgggtttataaataaacacagaTTAAAAAGCCACAAACGAACACACGATGTTGGTAATTTCAAATGTGCTTTCTgtgataaagtttttaatacaagaaTAAGGAAGAACTGTCATGAGAAATATACTCATAATACAAATGCTCGATACACAACGAACTGTCCACAGTGTGATCAGTCGTTTACAAGTTACTACCAACGTAATAGACATATGTTCAAAGAGCATAACACATCAGCAGCTACATACAAATGTAATATATGTGAtaaatcctttattttaaaatcaaaattaacatCTCATATAAAGAAAGTGCATTTAATGGAACGTAATCATACTTGCACAGAGTGCGGTCAAGGTTTCTTCATCAAACAATCCTTAGATGAACATATGATAAAACACAATGGGGAGAGAGTTTTTAAGTGCACGGTTTGCCATAAAGCATATGCCAGGAAGAAAACATTGAGAGAGCACATGCGGATCCATAATAATGATAGACGTTTCAAATGTGAAATATGTGGACTGACATTTGTCCAAAAATGTAGTATGAAAAGCCATATGCTGTCAAACCATGGGGTTACATTAATGGAGTTTTTAATTCGGAAGAAAGAGACTTCATAG
Protein Sequence: MNIISSCRCCLSQPPDKDLKTAYTYNNGKSEVYGDMLKECFEINLSLDMSDTENGICDGCVNRLRDAADFKHQVLKCQKELHDLVEKIKAEKIPSLKEEYFDIDDQDDNMYFLELKEEITDIEEIKEDEKLAEILGLKEITVKKKHKKTKKTKKKDLEESDSKSDININSNLSLSFQSLKKYKFDLTFLSENKKHLLNIENIIKYSNCTPFTNKTLQGIICAYCKEIYPTLLELRQHMDGHKKIELSDCKRMDTNNLSIKMDTTDLKCTICDTNVNVLADLEKHLVKEHNIKFHEVESNYILEFKLKDGDILNCALCSSTFETFKMLLQHMNRHYRNYICDECDMGFINKHRLKSHKRTHDVGNFKCAFCDKVFNTRIRKNCHEKYTHNTNARYTTNCPQCDQSFTSYYQRNRHMFKEHNTSAATYKCNICDKSFILKSKLTSHIKKVHLMERNHTCTECGQGFFIKQSLDEHMIKHNGERVFKCTVCHKAYARKKTLREHMRIHNNDRRFKCEICGLTFVQKCSMKSHMLSNHGVTLMEFLIRKKETS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00144922;
90% Identity: iTF_00256226;
80% Identity: -