Basic Information

Insect: Calephelis virginiensis
Gene Symbol: -
Assembly: GCA_002245475.1
Location: NJDC01001059.1:91232-92794[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.6e-05 0.0014 19.6 3.9 1 23 143 165 143 165 0.98

2 8 1.2e-05 0.001 20.0 3.4 1 23 171 193 171 193 0.95

3 8 2.1e-05 0.0019 19.2 2.4 1 23 199 222 199 222 0.97

4 8 2.4e-05 0.0021 19.0 1.0 1 23 229 251 229 251 0.97

5 8 3.8e-07 3.4e-05 24.7 0.5 1 23 257 279 257 279 0.93

6 8 0.0039 0.35 12.0 2.1 3 23 290 313 288 313 0.87

7 8 3.8e-05 0.0034 18.4 1.2 1 23 319 341 319 341 0.98

8 8 0.00027 0.024 15.7 1.5 3 23 348 368 347 368 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.6e-05	0.0014	19.6	3.9	1	23	143	165	143	165	0.98
2	8	1.2e-05	0.001	20.0	3.4	1	23	171	193	171	193	0.95
3	8	2.1e-05	0.0019	19.2	2.4	1	23	199	222	199	222	0.97
4	8	2.4e-05	0.0021	19.0	1.0	1	23	229	251	229	251	0.97
5	8	3.8e-07	3.4e-05	24.7	0.5	1	23	257	279	257	279	0.93
6	8	0.0039	0.35	12.0	2.1	3	23	290	313	288	313	0.87
7	8	3.8e-05	0.0034	18.4	1.2	1	23	319	341	319	341	0.98
8	8	0.00027	0.024	15.7	1.5	3	23	348	368	347	368	0.98

Sequence Information

Coding Sequence: ATGTTCATGAACATGCAAGATTTGTTAGAACACGATactattaaagtaaaattaatagataTATTGGTGTTCTTAAATTGTCTAGAGaatAATGATGAAGAAAATTGGCCTCAAAATATGTGTGCTTCTTGTGTGTCCACTGCACTATTGGCATATAGTTTCAAATTAGATTGCTTGAAAGCTAATTCGGCACTGTCACAGATATTTACAGTACAGCCCTCGTCAAACAATATACAACACCATAATGATTCCATAGACATTAATGTTGTCTACCAAGACCACGAATATGAATACCCCATGTTCAGTCACAATcctgaattaaattttgaaaacactGCTCATAGCAGCAAAGAAGTAATTCCTTTGCCACCAGTTACTGAATTGACAGCTACTGAACAGATACCTCGTAAAGTGGGGGATAAAAAGTACACTTGCAATATTTGTGCAAAATCTTTTACAAGAATCCACAGTTTAAGATACCATATgacaaaacataataattttaaaaaatttctgTGTTCTAAGTGTGGTAAAAATTTTCATACTTCCAGTGGCTTGCAACAACATTTGAAGTCTCACAAAGATGTAGCACAGTTTAAATGTGGATTctgtaataaaacatataagtcaAGGCAATCTCTTAAAGTCCATTTTCGAGTTGCCCATTCCagtaattgtaaattatttgtctgTGTTACCTGTGGGAAAAGGTTCACGGCAAAATCAACTTTAATCACACATTCCAAAAGTCACACCGGAATCAAAGAATTTGCTTGTTCGATTTGTGGAAAAAGTTTTACCCGGGCATCATACCTGAAAGCacacaattttattcatatGGGACAAGATAGACCACGTCCATTTTTATGTAGATACAAGGAATGTGATAGAAATTTTGCTACAAAACATTCTCTACTTGTACATATAGCTCATGCTCATTCCACGGAAAGACCACATAAATGTGATGTATGctacaaaggttttgctacctTATCTGGGTTGAAAATACATACACAGTCTCATGAAACCACTCAAGTGTTCTGTTcactatgtaataaaaaattagcaAGTAAGAGAGTCCTTCAAAAACACATGAGGGTTCATACTGTTGATAATGTTTATcttgaaaataatgtttgttag
Protein Sequence: MFMNMQDLLEHDTIKVKLIDILVFLNCLENNDEENWPQNMCASCVSTALLAYSFKLDCLKANSALSQIFTVQPSSNNIQHHNDSIDINVVYQDHEYEYPMFSHNPELNFENTAHSSKEVIPLPPVTELTATEQIPRKVGDKKYTCNICAKSFTRIHSLRYHMTKHNNFKKFLCSKCGKNFHTSSGLQQHLKSHKDVAQFKCGFCNKTYKSRQSLKVHFRVAHSSNCKLFVCVTCGKRFTAKSTLITHSKSHTGIKEFACSICGKSFTRASYLKAHNFIHMGQDRPRPFLCRYKECDRNFATKHSLLVHIAHAHSTERPHKCDVCYKGFATLSGLKIHTQSHETTQVFCSLCNKKLASKRVLQKHMRVHTVDNVYLENNVC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00256219;
90% Identity: iTF_00256219;
80% Identity: -