Cvir006663.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- -
- Assembly
- GCA_002245475.1
- Location
- NJDC01000897.1:172672-189961[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00042 0.037 15.1 0.2 2 23 136 157 135 157 0.93 2 12 0.00089 0.079 14.1 2.6 1 23 163 185 163 185 0.96 3 12 0.00013 0.012 16.6 0.5 1 23 284 306 284 306 0.98 4 12 2.8 2.5e+02 3.0 0.2 2 23 313 335 312 335 0.91 5 12 0.001 0.093 13.8 0.0 3 23 386 407 384 407 0.90 6 12 0.0057 0.51 11.5 0.3 1 23 422 444 422 444 0.96 7 12 2.6e-06 0.00023 22.0 0.2 1 23 473 495 473 495 0.98 8 12 0.00065 0.058 14.5 0.2 1 23 501 523 501 523 0.97 9 12 0.00037 0.033 15.3 0.3 1 23 529 551 529 552 0.95 10 12 0.004 0.36 12.0 0.2 1 23 595 617 595 617 0.97 11 12 0.004 0.36 12.0 0.2 1 23 646 668 646 668 0.97 12 12 0.0086 0.77 11.0 0.1 1 20 814 833 814 836 0.93
Sequence Information
- Coding Sequence
- ATGGATGGCGAGGAGTTTAATTTGCATTGGGAAGATGATGAGAAGCCTAACATAGCAGGAGAAGAAGTAATATGTGGTTTGGACAATGACCAGTCAGTTTCCTATTCAAATATGACTTCAGAAGAAATCATTGCACATACAGATCAAATAGCAGCGGAGAACTTAGTATATTTATCACAAGAAGTTGTAAGTTATACAGATCATATAGGTTCTGTAGAAGACCCCAATGTAGAATGTGTAACAGAGGAAGTTATAACGGATGATTGGGTCCTGTCTGGTGGACAAGAAagaGTGGAAGTGCCCATAGAACATCTAACAAACCCAGTGCTggatataaaaatagaaaatgacaTTGATGTTCCTCTGCCAACTGACCAAGATGAATACACAGCTATGCGGCCATGGCCATGTGACTTTTGTTCTCGGCGGTTCCGCAAAAAGGCGGCGCTGATGAACCACATGGTCGCTCACCAGAATGACCGTCCGCACGCTTGCAACCTCTGTGGAGTGCGGTACGTCCGCAAGTGTGACCTCATGACGCATTTGAAGATACACGCCTTCGTGCCGGATAACGCTGATCCCATTGATTATGatGACATGATagataatagtaaattattaaaagttagaaaaaaacGGGGCCGACGGAAAAAAGTTTCGGAACCTGCAGAGAACGGTGTGTGGGAGCACATGACGTCGGCGCGCACGCAGCAGTGGTCGCGGCGAGCGCGCTCGCCCGCGCCGCCCCCGTCGCCGCCGTCGCCCGCGCCATCCCCATCCCCGCCGCCCCGCTCCTCGCCCTCCCCGCGCTCACCATCGCCGCCTCCGCCCGCCGACCCCTCGCGCCCCTTCGTGTGTCGCCACTGCGGGGTCGGCTTCGCCAGGGAGAAGGCGCTACAGTCACATTCTAGGGTGCACGGCGGCGACTCCCCGGTGGAGTGCGGGTCGTGCGGGGAGCTGTGCTGGTCGCGGGAGGCGCTGCGGGCCCACACCCGCGCCCGCCACCCGCACCTGCCGCCCGCGcgcgcgccgccgccgcccgACACCGACTCCGGAGACGACATGGACTACCAGTTGTCCCCCCTGGGCCCCAGCGAGCGAGAGCGGGAGCGTGATCGCGATCGGGGCGAGGGCGTGCGAGGACCGGAGCTGTTCTGCGGGGACTGCGGGGTGGCCTTCCAGCGGGCCGACCTCTTGCGGAGACACGTCGCAGCCGCGCACAGTTACAAGAGGCACGACAGCGGCAGTGGGTCGTGGGAGCTCCACACGTGCGAGGTGTGCGGGGAGACCTGTCCCGACGCGCTCACACTGCTGGCGCACGCCGAGCGGCACACCGAGCGGCCGCGGGCGCACACCAGgTTAAAAAAGATGTCTCGTGGCCGAAATAATACATCATATTCGAGCAGTTCCAGGCAGTTCCCTTGTAAAGAATGTGGTAAGGTGTTCGGTTCCCGGAGCTCTCAGCAAATCCACATCCGGATCCACACCGGCGAGCGGCCGTACGCGTGTCGGTTTTGTTGGAAAGCATTCGCCGACGGCGGCACGCTGCGTAAGCACGAGAGGATTCACACCGGCGAGAAGCCGTACGCGTGCGCGGTCTGTCCGCGGGCCTTCAACCAGCGCGTCGTACTGCGGGAGCACGTCCGCAGCCATCACTCGCTGCCCGACCGCACCGACCGCCGGAACGGACAGAGTCAGTacaacacacacgcacacacaaacacacacagagagagagagagagagagacgcGTGGGTGCGCAAGTATGTGGAGGGTACCAGTACACTTGCGTCGTTTGCGGGCAATCACTACATTCTAGCGGTGAACTAGTCCAACATCTCATACAACACTGCGACGAAAACACAGCAATGAAGAGACAGCCACAGCAGTATATCAAATTGGAGTGTCTTATATTTGCAGGTGGAGGGTACCAGTACACTTGCGTCGTTTGCGGGCAATCACTACATTCTAGCGGTGAACTAGTCCAACATCTCATACAACACTGCGATGAAAACACAGCAATGAAGAGACAGCCACAGAGCGGACCGAGGAAATACAAACGGAGACGGAAAATGAAGGAGTCGTCCCCTGGAGCGGGCGCGTGGGAACGGTCGCCGTCCGTGTCCCCGGCGCGTTCCCCCTCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCGCCCCGCGCGCGCCCGCCCGCTGCCCCGCCCCCGCATGATACACACCGAGCACACGCCCGCACCAAGGGGAAGACCGCGACAGACGCGAGGAAGAAGGCCACCTCGTCACCCGGCAGATGATCTACTTGCCATCGGCCCCCACTCCCCCTCCCCAGTGCCCCCTTCCCCTGCGTCCCCTCCGTCACCCGACCCTATGTCTCCTGAAACCTCGCGTCCGCCGTCCCCCCAACTGAAACTAGAGTCATCCTCAGAAGGTCCCTTCAAATGTGAGATGTGCTCTTTGGAGTTTCCCCGTCGAGATGCGCTCTTGTTGCATGTTCCCGTACACATATGA
- Protein Sequence
- MDGEEFNLHWEDDEKPNIAGEEVICGLDNDQSVSYSNMTSEEIIAHTDQIAAENLVYLSQEVVSYTDHIGSVEDPNVECVTEEVITDDWVLSGGQERVEVPIEHLTNPVLDIKIENDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMTHLKIHAFVPDNADPIDYDDMIDNSKLLKVRKKRGRRKKVSEPAENGVWEHMTSARTQQWSRRARSPAPPPSPPSPAPSPSPPPRSSPSPRSPSPPPPADPSRPFVCRHCGVGFAREKALQSHSRVHGGDSPVECGSCGELCWSREALRAHTRARHPHLPPARAPPPPDTDSGDDMDYQLSPLGPSERERERDRDRGEGVRGPELFCGDCGVAFQRADLLRRHVAAAHSYKRHDSGSGSWELHTCEVCGETCPDALTLLAHAERHTERPRAHTRLKKMSRGRNNTSYSSSSRQFPCKECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSLPDRTDRRNGQSQYNTHAHTNTHRERERERRVGAQVCGGYQYTCVVCGQSLHSSGELVQHLIQHCDENTAMKRQPQQYIKLECLIFAGGGYQYTCVVCGQSLHSSGELVQHLIQHCDENTAMKRQPQSGPRKYKRRRKMKESSPGAGAWERSPSVSPARSPSPXXXXXXXXXRRPARARPLPRPRMIHTEHTPAPRGRPRQTRGRRPPRHPADDLLAIGPHSPSPVPPSPASPPSPDPMSPETSRPPSPQLKLESSSEGPFKCEMCSLEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -