Basic Information

Insect: Calephelis virginiensis
Gene Symbol: -
Assembly: GCA_002245475.1
Location: NJDC01004064.1:91907-112355[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.83 74 4.7 0.6 6 20 12 26 7 28 0.88

2 12 0.0011 0.095 13.8 0.1 3 21 35 53 33 54 0.96

3 12 1 93 4.4 0.2 1 11 218 228 218 231 0.90

4 12 8.2e-05 0.0073 17.3 0.3 1 23 387 409 387 409 0.96

5 12 2.5e-05 0.0022 18.9 0.8 1 23 422 444 422 444 0.98

6 12 6.8e-05 0.0061 17.6 1.3 3 23 498 518 496 518 0.96

7 12 0.00041 0.036 15.1 2.9 1 23 534 556 534 556 0.99

8 12 1e-06 9e-05 23.3 3.6 1 23 562 584 562 584 0.98

9 12 0.0025 0.22 12.6 6.2 1 23 590 612 590 612 0.97

10 12 7.7e-06 0.00068 20.6 0.4 1 23 618 640 618 640 0.98

11 12 0.00021 0.019 16.0 0.1 1 23 644 666 644 666 0.98

12 12 0.00054 0.048 14.7 0.1 1 23 674 697 674 697 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.83	74	4.7	0.6	6	20	12	26	7	28	0.88
2	12	0.0011	0.095	13.8	0.1	3	21	35	53	33	54	0.96
3	12	1	93	4.4	0.2	1	11	218	228	218	231	0.90
4	12	8.2e-05	0.0073	17.3	0.3	1	23	387	409	387	409	0.96
5	12	2.5e-05	0.0022	18.9	0.8	1	23	422	444	422	444	0.98
6	12	6.8e-05	0.0061	17.6	1.3	3	23	498	518	496	518	0.96
7	12	0.00041	0.036	15.1	2.9	1	23	534	556	534	556	0.99
8	12	1e-06	9e-05	23.3	3.6	1	23	562	584	562	584	0.98
9	12	0.0025	0.22	12.6	6.2	1	23	590	612	590	612	0.97
10	12	7.7e-06	0.00068	20.6	0.4	1	23	618	640	618	640	0.98
11	12	0.00021	0.019	16.0	0.1	1	23	644	666	644	666	0.98
12	12	0.00054	0.048	14.7	0.1	1	23	674	697	674	697	0.96

Sequence Information

Coding Sequence: ATGGAAGACCAAACGCTTGACTGTCCGCTTTGTTGTAATATGAAATTTAGCTCTAAACAATTACTTGTTGAACATTTATCTAATAGGACATCAAATTTACTTTGTCCCATATGTAAATTACACTTTACTTCTCTAGATCTCCTCATAGACCACATAAGATTAGACAATTGTGATAATACACACCAAACATTGATATTTGAAGAGGCTATCAAAGACGTGACAAATTCAGATTTCAATCAACTCAATGATGaagGAGCACGGGATATTGTACATCATTTACCAAATACTTTGTCTGACAATACTGGTAGTGAGATGGGCCAAACCATCAGTCTCAGCACTTTAAATGAAGGCTCAGAAACGAATAAATTGTATGTGGAAATTATAAACAAAGATTCAACAAATTCAACCCTTCAGAAGGCAGAAGTAAAGCTATTTGAAGAAGatgggaaaaataaatattttgtatttaccaACGACTCACTACTGCTTACAGATAAAATTAATTCGAACACTGTAGTTACTAAAAACAATGATGGGACCATTTCATTGACAACTATTAAAGATTCggaagaaaatgtaaaaaaggaaGCTCAAATATCAGAAACACCTCCAGTTTCAGAAGAAGATACTGAGGaaaataaagaggaaatgtacTTTTGCAATACCTGTGGAGTGTCATTTATATCTGTCCTAGAGCACATACAAAACTATCATAATGATCAGGAAGTTGTTGTGGAAGAATCAGTGTGTGAAACGAGTACAGCAAACTCAATGGAATATGATCCTGTTGTTCTTGTTGACAATAAAGAGGAAGAAACAGTTGTTGCAAAAGAAGCAACTGCAAAAATTATTACCGAGTCTGGGAATATTGTCCATGTACCAATAGAGCAAGCTAtagttacagAATCAAATGAACCTAAACTTATGCAATCAATCAAAAGAGAACCGCGATTTTTGCAGAtagataaattatgtaatacatTTGTAAAGGGTATTAGTAAAGATAATACTGTGAAAGAAGGACCTTATCACAAAGTAATATTGAAGGAAATGACAACTCAGACAGGGGCCAAACTACAGGTGTATAATTGTATGGTGTGTAATGTATATGTGACAGCGCTTTCGGAATTCCAAAATCGACCATGTAAAACATtaaaatatttatgccCTCAATGTCCTGTTGCGTAtgaaaactcaaaatcgttGTGTGCACATATGAAAGTTCATAAAAGTAAAGCACCGCCAGaaaaCTTTTCAGTCAAATTTGAATGTGAAATATGCTCAACAATATTCCCAACTAGTAAATCGTTAAAATTACATAAGAGAATGCATGATCCAGTCAAATCTCGACCGATCATCCCACCAATGGAGACTAAGGACGGATCAGTGGCCAGTAATGACAAGTTCCTATGTTCTGTGTGCCATAAGTTAATACCCATAGACTACAGAGTCATTCACCAGAACTCGCACAAAGCCAACAACAATATGATATGTGATATTTGCAATAAGAAGTTCCACTCCAGGGAGTACCTGGAGATGCATATGAGTGTACACAATTTTGATAAGGCTCCACCGGGCAAGCAAGACATATCGCTTCCATACaaatgtttatattgtaatagGAAATTCGCGAGGCCACACGAGAAAGTCAAACATGAACGTGTTCACACAgGCGAGAAGCCGCACTCGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGGCGTACTGCCTGACGCTGCACATGCGCACGCACACCGGCGCGCGCCCCTACGCCTGCCCGCACTGCAACAAGAGGTTCAAAGCTCACAGCGTGTACAATCACCATCTGTTAACGCACTCAGAAGTCCGTGCGTACAAGTGTCCGTTCTGTCCGAAGGCGTTCAAGACGTCCGTACAGCTGGCGGGACATAAGAACTCGCACACAAAACCGTTCTCGTGCCAACAGTGTAATAGACCGTTCGCGTCCCTGTACGCGGTGCGCGTCCACATGGAGGTGCACGCGCGCCAGAACAGCCTGAAGTTCTCGTGCACCTCCTGCGGCGCCAGCTACGCCCGGGCCTTCGCCCTCAACGACCACATCAAGCAGGCGCATCCCGCCCAAGGGAAGGAGGAACGGGAAGCCTTGATATCTATTACGGGGCtataa
Protein Sequence: MEDQTLDCPLCCNMKFSSKQLLVEHLSNRTSNLLCPICKLHFTSLDLLIDHIRLDNCDNTHQTLIFEEAIKDVTNSDFNQLNDEGARDIVHHLPNTLSDNTGSEMGQTISLSTLNEGSETNKLYVEIINKDSTNSTLQKAEVKLFEEDGKNKYFVFTNDSLLLTDKINSNTVVTKNNDGTISLTTIKDSEENVKKEAQISETPPVSEEDTEENKEEMYFCNTCGVSFISVLEHIQNYHNDQEVVVEESVCETSTANSMEYDPVVLVDNKEEETVVAKEATAKIITESGNIVHVPIEQAIVTESNEPKLMQSIKREPRFLQIDKLCNTFVKGISKDNTVKEGPYHKVILKEMTTQTGAKLQVYNCMVCNVYVTALSEFQNRPCKTLKYLCPQCPVAYENSKSLCAHMKVHKSKAPPENFSVKFECEICSTIFPTSKSLKLHKRMHDPVKSRPIIPPMETKDGSVASNDKFLCSVCHKLIPIDYRVIHQNSHKANNNMICDICNKKFHSREYLEMHMSVHNFDKAPPGKQDISLPYKCLYCNRKFARPHEKVKHERVHTGEKPHSCEICGKSFRVAYCLTLHMRTHTGARPYACPHCNKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQQCNRPFASLYAVRVHMEVHARQNSLKFSCTSCGASYARAFALNDHIKQAHPAQGKEEREALISITGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00256199;
90% Identity: iTF_00256199;
80% Identity: -