Cvir000679.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- -
- Assembly
- GCA_002245475.1
- Location
- NJDC01002713.1:168349-181570[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.027 2.4 9.4 0.0 1 23 149 171 149 171 0.98 2 12 0.1 8.9 7.6 2.8 1 23 178 200 178 200 0.97 3 12 0.0093 0.83 10.9 0.1 1 23 204 227 204 227 0.97 4 12 1.4e-05 0.0012 19.7 6.5 1 23 232 255 232 255 0.94 5 12 0.0036 0.32 12.2 1.6 1 23 261 283 261 283 0.98 6 12 2.8e-06 0.00025 21.9 3.4 3 23 297 317 295 317 0.97 7 12 0.00021 0.018 16.1 0.5 3 23 324 345 323 345 0.96 8 12 0.00036 0.032 15.3 2.8 2 23 358 380 357 380 0.96 9 12 0.019 1.7 9.9 1.5 1 23 387 410 387 410 0.95 10 12 0.0056 0.5 11.6 0.8 6 23 421 438 420 439 0.95 11 12 2.4e-06 0.00021 22.2 0.6 2 23 449 470 448 470 0.96 12 12 2.7e-06 0.00024 22.0 1.2 1 23 475 498 475 498 0.97
Sequence Information
- Coding Sequence
- ATGTCTACAGAGATTAATACAAAAGAAGACCCGGATGGTCCGCTGAATTTGAAAGTAGAAAGCATTAAAGCTATTGAAGAGGAAGCTGGTTTAAGTTTAAGTACTCCTGAATTTATATTTGAGAATCATCTCATTAAAGAAGAAGCACCATATGATGACTACGAAAATCAGGATGTATATGAAGAGAAAGATATTAAATCAGAAGTAGAAAGTGAGGAAGATAATGAAAATGATGAAACTTATGACCCTGAAtcggaaaaaaagaaaaagaaacctAAAGAGAAGAACACAAACATCGTTAACCCGGTAATAAAAGGACGAACTTTAAAAGGTGCTTTACAATACACGGAGGAAATGGTGATGCACATTGAGATAGAGACTATATCAGAGGAGGAGAGACAATTGGAACACCGAGAACTCCTCAACGCCAGGCTTCATATGCGGTTTGTGTGCGAGTGGTGCGCGCTGGGATTCGTCGTCGAAGATGCGTATAAAGATCatcaaaaaatacattcacCGGAGAACGGTGCCCACGAGTGCGACATCTGCCACTCGCGGGTGAAGACGGCGGACGTGCTGTACCGGCACAAGCTGCGCCACTACCGGCGCTACCGCTGCGACCTGTGCGACCTGCGCCTGCGCGACAAGGACTCGGCCGCGGCGCACGTCATGCGGGACCACTACGGGGCCACCTTCAAGTGCACGCACTGCGACCGCTGCTTCAAACGGCCACAATATTTGAAGAGGCACGTCGAGCAGATGCATACAAGACAGACGGAGTACGTGTGCCCGGTGTGCAAACGGGTCTTCTACGAGCGAGGCTGGTATAGGTGTCATGTCAGGACACACAACGAGGAAGTGCGCAACGGTCAAAGACGTCCCGTGAACTGTTCGCATTGCGGCCGCGAGTTTAAGAACAAACAGTATTTAAAGCGCCATCTGTTGACGCACGAGGGGAGAGAAGTGGACTGCAAGATCTGCGGCCGGGATTTCAAGAATACTGAGGTGTTGAGAGCACACTACAGGCAGCAGCATTCCGAGCATGCATATGTGTTGCAACGCACGCGTTCAGAATGTACACAATGTGGACGCATCTGTTGTACTCCTGCGATGCTTCAGCGACACGTTCAACGAATGCACTCTGATCGTACCAAGAGGTTCGAGTGCGCGCACTGCGGGCGGCACTACCTGACGAAGGGCGAGGTGCGGTCGCACATCATGTGGTCGCACCTGCGGCGTGCGGGCGGGCACGCGTGTGCGTGCGGCCGCGTCTTCCGCTCGCCCGCCCGTCTGCGCCACCACGCACAGGTCCACCATCTCCGTCTGCCGCAGCCCCGCGACAAGCCCTGCCCCGTCTGCGGGAAGTGCTTTGCTaacCAGCAAGTCCTAACTCGACATATAAAAGGACATAGCGGGGAGACATACCCTTGTACGGAATGTGGTCAAACTTTCAAGACTCAGTCATATGTGAAAGTCCACTATAAAATCAAACACCTTAATATGACTCGTGCTCAAATCAAAGCGGAATCTAAACGGAAGCTTCTCATGGTGGATGAGCATTTACCTGAAAACTTGATTAATTTTCGTCGAGATGAAACTGCGGAAGATCCTCTCAACTTCAAAGATATGGATATAGAAGCTTACAATACTACACAATCTTCTGAAATAGACGATTCTGGAAACTTGCAACACTTTGAAGAGGTACGAATCAAAGTGGAATTAGAGGAAGAGCCAGAAAATGAGAGTGACAACTTTGATGTGTTAGAGGTTCCGAAGTTCGAAACGTTTGTTGATATACAAAGAGACTAA
- Protein Sequence
- MSTEINTKEDPDGPLNLKVESIKAIEEEAGLSLSTPEFIFENHLIKEEAPYDDYENQDVYEEKDIKSEVESEEDNENDETYDPESEKKKKKPKEKNTNIVNPVIKGRTLKGALQYTEEMVMHIEIETISEEERQLEHRELLNARLHMRFVCEWCALGFVVEDAYKDHQKIHSPENGAHECDICHSRVKTADVLYRHKLRHYRRYRCDLCDLRLRDKDSAAAHVMRDHYGATFKCTHCDRCFKRPQYLKRHVEQMHTRQTEYVCPVCKRVFYERGWYRCHVRTHNEEVRNGQRRPVNCSHCGREFKNKQYLKRHLLTHEGREVDCKICGRDFKNTEVLRAHYRQQHSEHAYVLQRTRSECTQCGRICCTPAMLQRHVQRMHSDRTKRFECAHCGRHYLTKGEVRSHIMWSHLRRAGGHACACGRVFRSPARLRHHAQVHHLRLPQPRDKPCPVCGKCFANQQVLTRHIKGHSGETYPCTECGQTFKTQSYVKVHYKIKHLNMTRAQIKAESKRKLLMVDEHLPENLINFRRDETAEDPLNFKDMDIEAYNTTQSSEIDDSGNLQHFEEVRIKVELEEEPENESDNFDVLEVPKFETFVDIQRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -