Cvir005023.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- -
- Assembly
- GCA_002245475.1
- Location
- NJDC01000127.1:17361-22144[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00014 0.013 16.5 0.8 1 23 64 87 64 87 0.94 2 17 0.0017 0.15 13.2 3.2 1 23 124 146 124 146 0.97 3 17 0.095 8.4 7.7 0.0 3 23 171 192 169 192 0.94 4 17 6.4e-05 0.0057 17.7 0.9 2 23 213 235 212 235 0.96 5 17 0.00041 0.037 15.1 0.2 2 23 241 263 240 263 0.91 6 17 0.00064 0.057 14.5 1.3 1 23 267 290 267 290 0.95 7 17 0.014 1.2 10.3 3.9 2 23 293 315 293 315 0.96 8 17 0.12 11 7.3 3.1 2 23 321 343 321 343 0.95 9 17 0.0014 0.13 13.4 1.0 1 23 391 414 391 414 0.95 10 17 0.4 36 5.7 0.2 2 23 442 464 441 464 0.94 11 17 0.15 14 7.0 0.0 2 23 487 509 486 509 0.95 12 17 9.6e-06 0.00085 20.3 0.3 3 23 516 537 515 537 0.94 13 17 0.056 5 8.4 3.5 2 23 542 564 541 564 0.95 14 17 0.00039 0.035 15.2 2.7 1 23 569 592 569 592 0.97 15 17 3.3e-06 0.00029 21.7 5.0 1 23 596 619 596 619 0.97 16 17 0.0002 0.018 16.1 0.3 2 23 626 647 625 647 0.96 17 17 4.6e-06 0.00041 21.3 0.4 1 23 653 675 653 675 0.98
Sequence Information
- Coding Sequence
- ATGATAGGCTTTCTTCGACACTCTGCTACGTGTATAACAAACAAAGATGGTGTTGAAATTTGCGGACAAGAAACTGTAGCCGTTAGGGACGACATTGGAAAACAACCCGTTGTTGTTCAAATACGAAATAATTTagcatgtattttaaatatgtcaacGGCTataccttttaaatattttatgaataaatttagaTGCTTTTACTGTTCAAAAGACTTTGCTGATTCTACAGATCTTAGGCAACACACAGTTGTAGAACATCCAatctATGAAAACCAGCAAAGCCGTTGTGCCTCTAAGCAGAGaccagaaaatttgaaaattcttttcaaCAACACAAGTTTATGGCCATTTAAGTGGCATGGGAAATTCTCTTGCTTTTACTGCGATAAATATTATGACGAATATTCAGATCTTAAGAAACATTCAAAATCTCATGGCCTATGCACTACAGAAGATTATGAGACAGGGAAAGATATGGAAATCAAATTAGACATTTCTGagattttttgtgaaatttgtacTGAACCATTTGAAACGTATGACGAAATTGTCGATCACTTAATTATCAAACATGATTTAGGATACGATAAATCGATCGAAATGTCATTCCAAGAATTTAGATTAAGGGATTTAAATTGTCAATTTTGTGGAGAGTGTTTTGCAAATTTTGCCGATCTTTTCAATCACATAAATACCGTTCATTCGCGATGCACCTGCGTATGTGATGACTGTGGAGTAGTTTATGATACGAAGAAAGCTTTGGCTAAACATCTGATCGATTTACATCGAGGTGACCATCCTTGTGAAGAATGTAATACAGTATTTGAATCCAAAATTTTGCTTcggattcataaaaaaaactttcattttcGGAAGTGTAAATTATGTGAATTACATTTCGATTCATTTAGTTTGTTAAAGAAACACGTGAAATACAAACATCCAGACAATACTCGTAAATGTCCTCAATGTTCAAAACAGTTTCTTACATTACAAGGTCTCAAACGACATGTTGATAAATGTCACTTTTTAAAAGTTACCAATGATACGCTTCAAGAAGAAAACTTCGTTGCACCTAAGAAGAAACAGAATGTCGTACAAATACGGCAAAACATTCAATGTGTTCTTAACATGTCTAATGCAATAccattccaatttttttctaagttttcttgtttttattgttCCAAAAAGTTCGTTGAGTTTGAAGAGCTCAAAGCTCACACGACTGTAGAACACCCTGTGTGTGATTTAAAATCGAAATGTATGAAAAGGTGTAAGGGGGAGAGAATTACTGTGAAAATCGATATATCTTCATTGACATGTAAGTTATGCTCTCTTTTTATTGACAACTTAGACAGTCTTATTGACCATTTAATATCAAAGCATGATGCTCAGTATGATAAAGATATTACTGGGTGTTTGCAGccttttaaaatagttaaagatAATATTCCATGTCCATCTTGTCCAAATGTTTTTCGATATTTCGGTATTTTATTACGGCATATCAACTcggaacataataataataataaaatttgcgaTTTCTGCGGTCGCAGTTTTAGAAATGTTTCAAATCTAAAAGTCCATATAGCGTACACTCATACAGGCTCGAGTGAATGTGAAATATGTGGGTCTAAATACAAAAACCAATGGTGCTTAGGAAGGCATAGGGCTAAGTGTCACAATGCTAAGGACTACAAATGTCCGAAATGCCCCGAACAATTTCAGTCTCAATATCATAAGCAAAAGCATCTTATAAAAGCACATGACATAGGACATAAATGTTCGTATTGTGGAAAAATGTTTACGAGGAATTCTTTCATGAAAGACCATATTCGAAGGACGCATTTAAAGGAAAAGAACGTACCGTGTTCGGTTTGTAATGAGaggttttttgataattatttattgaaactgCATATGGTCAAACATGAAGGGGAGAGAAAATTCAGTTGTGACGTTTGTGGTAAAGCCTTCTTAAGGAGGAGTAATTTGAGTTCACACATGGAAATGCATAAAAAGTATGGGCATATCACATCAGTAATGTAA
- Protein Sequence
- MIGFLRHSATCITNKDGVEICGQETVAVRDDIGKQPVVVQIRNNLACILNMSTAIPFKYFMNKFRCFYCSKDFADSTDLRQHTVVEHPIYENQQSRCASKQRPENLKILFNNTSLWPFKWHGKFSCFYCDKYYDEYSDLKKHSKSHGLCTTEDYETGKDMEIKLDISEIFCEICTEPFETYDEIVDHLIIKHDLGYDKSIEMSFQEFRLRDLNCQFCGECFANFADLFNHINTVHSRCTCVCDDCGVVYDTKKALAKHLIDLHRGDHPCEECNTVFESKILLRIHKKNFHFRKCKLCELHFDSFSLLKKHVKYKHPDNTRKCPQCSKQFLTLQGLKRHVDKCHFLKVTNDTLQEENFVAPKKKQNVVQIRQNIQCVLNMSNAIPFQFFSKFSCFYCSKKFVEFEELKAHTTVEHPVCDLKSKCMKRCKGERITVKIDISSLTCKLCSLFIDNLDSLIDHLISKHDAQYDKDITGCLQPFKIVKDNIPCPSCPNVFRYFGILLRHINSEHNNNNKICDFCGRSFRNVSNLKVHIAYTHTGSSECEICGSKYKNQWCLGRHRAKCHNAKDYKCPKCPEQFQSQYHKQKHLIKAHDIGHKCSYCGKMFTRNSFMKDHIRRTHLKEKNVPCSVCNERFFDNYLLKLHMVKHEGERKFSCDVCGKAFLRRSNLSSHMEMHKKYGHITSVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -