Cvir000631.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- -
- Assembly
- GCA_002245475.1
- Location
- NJDC01013711.1:71949-82671[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 3.2 2.9e+02 2.9 2.2 1 21 72 92 72 93 0.92 2 27 0.77 68 4.8 0.1 3 23 122 142 121 142 0.95 3 27 0.037 3.3 9.0 1.4 3 23 166 186 164 186 0.95 4 27 0.016 1.4 10.2 0.1 1 23 190 212 190 212 0.95 5 27 1.1 1e+02 4.3 0.6 1 14 217 230 217 240 0.78 6 27 0.015 1.4 10.2 0.6 1 23 246 269 246 269 0.95 7 27 0.0076 0.67 11.1 1.9 1 23 276 299 276 299 0.96 8 27 0.00021 0.019 16.0 1.5 1 23 306 328 306 328 0.97 9 27 2.3e-08 2.1e-06 28.5 0.7 1 23 334 356 334 356 0.98 10 27 0.0082 0.73 11.0 2.3 2 23 360 382 359 382 0.95 11 27 0.024 2.2 9.5 5.5 1 23 459 482 459 482 0.96 12 27 0.25 23 6.3 1.3 2 23 509 531 508 531 0.93 13 27 0.081 7.2 7.9 2.9 1 23 553 575 553 575 0.98 14 27 0.00077 0.069 14.3 0.2 1 23 579 601 579 601 0.97 15 27 0.00058 0.052 14.6 0.8 1 23 606 629 606 629 0.96 16 27 0.0087 0.78 10.9 0.6 1 23 635 658 635 658 0.95 17 27 0.041 3.6 8.8 0.7 1 14 665 677 665 681 0.82 18 27 0.032 2.8 9.2 0.6 1 23 717 739 717 739 0.92 19 27 0.59 53 5.2 0.0 2 23 763 785 762 785 0.94 20 27 0.47 42 5.5 0.7 1 23 807 829 807 829 0.95 21 27 0.00074 0.066 14.3 3.0 3 23 835 855 834 855 0.97 22 27 0.0012 0.11 13.7 2.0 1 23 862 885 862 885 0.95 23 27 0.00017 0.015 16.4 1.3 1 23 891 914 891 914 0.96 24 27 0.0024 0.21 12.7 0.9 1 23 920 943 920 943 0.97 25 27 0.002 0.18 13.0 6.1 1 23 949 971 949 971 0.98 26 27 7e-07 6.2e-05 23.8 0.9 1 23 977 999 977 999 0.99 27 27 5.3e-05 0.0047 17.9 4.7 1 23 1005 1027 1005 1028 0.96
Sequence Information
- Coding Sequence
- ATGACCTTACCGCAGGTGGGAAATGGTGGATCTAAAGGAACGgaaaatatagttataaaaatgacATCAAATAGCCATGATACTAATAAGACTTTAGAAAAACGAAAATATCAAAGAAGTGCCAGGGCTGAGGCAAGATTTGCCACGAAAAAAAATGCTAGCATTATTTTAGAGTGTTGGTCCATTACTCCATTTAGATGGAAAAAGAATAGGTTCAAATGTGCTTATTGTGAAGATCAATTCACTGACTGCGCTGAATTAAGATGCCACGTCAGAGTGTGTTCTGAACAGCATAGTGTAAAGGATATTTActgtaaatttaaagaaatgtctTTGATTAATATTGACGTCACCGAGGCGTTGTGCCGTTTATGTAGAATGCCCGTATCGAATGCAAATCAGTTACGGGATCATGTCTTAGACCATGGTTACGACTTCGATGTTTCTCATCCTGATGGGGTACTtccattttgtttaaataaggaTTCTTGGTGTTGTGTGTTATGTGAcgaaaaatttaacaattttctaaaGTTGTATGAACACATGAATATTCATTATCAGCATTACATTTGTGCGACATGCGGGAAAGGATATATGACAGCTCCAAGATTAAGAAAACATTCAGAAGTGCATATAAAAGGAGTTTTTCCGTGTGATAAATGCAGACGTGTTTTTAATATGCGAGCTGCAAGAGATTATCATAAAGCACATGCGCACGCAAAAGGTCCTCGCTACGAATGTCCTCAATGTAATATGAGGTTTAATGGTTACTATGAAAGGATGAATCACCTAAATGAAACACACAGAGAGAAGGAAGTGTCGTACAAATGTGCACATTgtactttatcttttaaaacaagCGGTAAACGAGCATTGCATGTGAGAAATGTACATTTTCCTGAGAAACGAAATTTCTCTTGTCTGTTTTGCAAGTGGGTTTTTAAAACGGGATATGAATTAAAGAAGCACATGGTTAAACATACTGGAGAAAAAAAATTCCCTTGCACAATATGCGGAAAGTCCTTTCCAAGAAATCGAGCTTTAAAGACACATATGAAAACTCATGAAGAGTTAAGTTGTAAGCATTGTGGATTATTGTTGAAACAAAGAACGCAGCTGATGACGCATTTACGTTTGAACCATTCAGATATAAgttccGCTAAAGCGGATGAAGAAAATGTGATGCCAACTAAACCCATCAGGAAGCTCAAGGAAGTTGTATGCGCAAGGCAAATGCGTCGACGGCGACGAGCCAACAATGAGATGTCTATATCTGATGAGTTGCGAATACCCAAAGCCATGATGAGGGCAAACGCTTTAACACTTCTGGAATTTTCAACTGCTTGGGCTTTTAGATGGTGTCGTAATAGTTTTTACTGTTGCTACTGTAATCATAAATTCACTGAACCATTACTGCTGCGGAGACATGTTCAAAGTAATCACCTGTCTAAACCCCCtactaaagaaatattttcaaaactcaaagaaaataatttgttaaaaatagatatttctgatttatattgtaaattgtGTAAGTGTAGTATAACTAATGTAGACTATTTAAAGGACCACTTAGTAAAGGCTCATGAAAAGACGATACATTCTGATTACGGTGATGGAGTCTTACCATTTAAGCTCGATTCGGATGGATTTCACTGTCAAATGTGTTCGGCTTTTTTCCAAAGCTTCAATAACGTGAACGTTCACATGAATTCTCATTTTCAGAATTATGTTTGCGATATTTGTGGGAATGCGTACATATCGAAGTCGAGATTTAGAGCTCATTTGGAATATCATGAAATTGGTAATTTTCCGTGCCGCGAATGCAAAGAAGTTTTTACAACGAAAGCAACTAGAGCACGTCACCAGTTAAAAATGCATCGTAAACGAGTGAGATATACTTGTCCATATTGCTCTGAACTGTTTAGAACTTATGATGCCAGaagtaaacatttaattaacgAACACGATCGTCCTGCGAATACCTATAAGTGTAGAGTTTGTGATAAAACATTCGACAGTAGTTggTTCAACGTAAACGTAAAATGGAAAACAAAACGCAAGTACAATGACCATAGAGATAATGCGGCGATTATTATTGAATGTTCGAATGCCTGCCCGTTTAGATGGAAACGTGGTGTTTTTGCGTGTTGGTGCTGTCCTAAAACCTTCGGTGATTTTGATGATGTCAGGACACATATGTCTGTTCATTCTGATCGTTTAGCGGGCATGAAAATAGCGCGAATTaatgataacattaaaattgagaTAACTAGTCTTAAATGCGAAATTTGTAGCGcaaatcttaataatttaaatgattttattgatCATTTGGCTTCCGTCCATGATAGATCTATCATACAAGACTATGGTCTAGGTGTGACCCCATTTTTATCAGCCAATAATGAATTTGTATGTGCTCTTTGTGCTGACCATTTTGCTTTGTTCTCTAGTCTGAATAGTCACATGAACCAGCATTATCCTAACAATATTTGTTCTCACTGTGGCAAAACTTTTGCTGTCAAGCATAGAATGAAAGCTCATCAACTCATTCACGAAGCGAGaaacaaatcatacaaatgtaccaaatgtgatgaagtttttgaaactaaatCCTTAAAAAATTATCATGTACAGAATAAGCACGGTTGCGAAAATAGATATCGTTGCCCGTATTGTAATGAATCTTTTAAACGTTATATAGATAGGTTGCGTCATCTGAAAGAATTGCACGAAAAAGTTGTAGAATACCCGTGTCATCTATGTTCAGCTGTATTCTCTTTGTCTGCTCAAAGGACGAAACACATTAGatatgttcatttaaaaaatactaattaccAATGCACATTTTGCTCTCACAAATTCGTCACTGCGTATCATTTAAAGAGCCATTTGGTTAAGCACAttggtgttaagaaattccaATGCGACGTCTGTAAGAAAAGTTATGCTAGGGCGAAAACTTTGAAAGAACATATGCGTATACATAATAATGATAGACGATTTGTATGCGAATATTGTAATAATGCGTTCGTTCAAAAATGTAGTTTAAAAAGCCACATACGGACACATCATACGAATGAGGAAAGTCTGAAAAGGTTTAActga
- Protein Sequence
- MTLPQVGNGGSKGTENIVIKMTSNSHDTNKTLEKRKYQRSARAEARFATKKNASIILECWSITPFRWKKNRFKCAYCEDQFTDCAELRCHVRVCSEQHSVKDIYCKFKEMSLINIDVTEALCRLCRMPVSNANQLRDHVLDHGYDFDVSHPDGVLPFCLNKDSWCCVLCDEKFNNFLKLYEHMNIHYQHYICATCGKGYMTAPRLRKHSEVHIKGVFPCDKCRRVFNMRAARDYHKAHAHAKGPRYECPQCNMRFNGYYERMNHLNETHREKEVSYKCAHCTLSFKTSGKRALHVRNVHFPEKRNFSCLFCKWVFKTGYELKKHMVKHTGEKKFPCTICGKSFPRNRALKTHMKTHEELSCKHCGLLLKQRTQLMTHLRLNHSDISSAKADEENVMPTKPIRKLKEVVCARQMRRRRRANNEMSISDELRIPKAMMRANALTLLEFSTAWAFRWCRNSFYCCYCNHKFTEPLLLRRHVQSNHLSKPPTKEIFSKLKENNLLKIDISDLYCKLCKCSITNVDYLKDHLVKAHEKTIHSDYGDGVLPFKLDSDGFHCQMCSAFFQSFNNVNVHMNSHFQNYVCDICGNAYISKSRFRAHLEYHEIGNFPCRECKEVFTTKATRARHQLKMHRKRVRYTCPYCSELFRTYDARSKHLINEHDRPANTYKCRVCDKTFDSSWFNVNVKWKTKRKYNDHRDNAAIIIECSNACPFRWKRGVFACWCCPKTFGDFDDVRTHMSVHSDRLAGMKIARINDNIKIEITSLKCEICSANLNNLNDFIDHLASVHDRSIIQDYGLGVTPFLSANNEFVCALCADHFALFSSLNSHMNQHYPNNICSHCGKTFAVKHRMKAHQLIHEARNKSYKCTKCDEVFETKSLKNYHVQNKHGCENRYRCPYCNESFKRYIDRLRHLKELHEKVVEYPCHLCSAVFSLSAQRTKHIRYVHLKNTNYQCTFCSHKFVTAYHLKSHLVKHIGVKKFQCDVCKKSYARAKTLKEHMRIHNNDRRFVCEYCNNAFVQKCSLKSHIRTHHTNEESLKRFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -