Cvir001706.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- -
- Assembly
- GCA_002245475.1
- Location
- NJDC01058098.1:352687-363776[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.011 0.96 10.6 1.0 3 23 652 673 651 673 0.94 2 24 5.7 5.1e+02 2.1 1.3 3 23 1019 1041 1018 1041 0.85 3 24 0.042 3.8 8.8 0.6 1 22 1046 1067 1046 1067 0.95 4 24 6.4 5.7e+02 1.9 0.3 1 22 1109 1130 1109 1132 0.82 5 24 0.0045 0.4 11.8 0.4 3 21 1143 1161 1141 1162 0.94 6 24 0.98 87 4.5 0.0 3 23 1171 1192 1169 1192 0.88 7 24 0.017 1.5 10.0 0.2 3 23 1212 1233 1210 1233 0.96 8 24 0.00066 0.059 14.5 2.4 1 23 1239 1262 1239 1262 0.96 9 24 0.12 11 7.4 0.0 1 23 1287 1310 1287 1310 0.90 10 24 0.018 1.6 10.0 3.4 1 23 1315 1337 1315 1337 0.97 11 24 0.017 1.5 10.0 0.2 1 23 1343 1366 1343 1366 0.95 12 24 0.0022 0.2 12.8 1.3 1 23 1382 1404 1382 1404 0.97 13 24 0.00017 0.015 16.3 1.8 1 23 1455 1478 1455 1478 0.97 14 24 0.0016 0.14 13.3 1.6 1 23 1550 1573 1550 1573 0.96 15 24 0.0019 0.17 13.0 1.5 2 23 1598 1620 1597 1620 0.95 16 24 0.083 7.4 7.9 0.1 2 23 1626 1648 1625 1648 0.93 17 24 0.0037 0.33 12.1 0.1 1 21 1691 1711 1691 1712 0.95 18 24 0.0012 0.11 13.7 0.6 1 23 1722 1744 1722 1744 0.93 19 24 0.00026 0.023 15.8 0.4 2 23 1834 1856 1834 1856 0.93 20 24 1.7e-07 1.5e-05 25.8 1.1 3 23 1863 1883 1862 1883 0.98 21 24 0.00055 0.049 14.7 0.0 3 23 1902 1922 1901 1922 0.96 22 24 0.12 10 7.4 0.0 1 23 1944 1966 1944 1966 0.97 23 24 0.0078 0.7 11.1 0.4 1 23 1972 1995 1972 1995 0.95 24 24 8.1e-06 0.00072 20.5 0.9 1 23 2003 2026 2003 2026 0.96
Sequence Information
- Coding Sequence
- atGAATGTGAATTATGATAGTGTTTGTAGACTGTGCTTGTCATCTCGATGTGAATTACTGCCGATATTTTCTACCACCAGTTCCGATGACTCGGAACCTCTTGTCCTCGCTTCGAAGATTAAAGATTGCGTGGCCGTACAGATAAACGAAAATGACAACTTGCCAACTAATGTCTGCAGGAAATGTATGGATAATGTGAATAACTGGCACATATTTAAGGGTGTTTGCACAAGATCTCAAGATAAACTGCAGGCTTGGATTAATGGAGAGAGCAACCAACTAGAAGAGgtcaaaataaaaagtgagcCTCTCCTTGAAGAGATTTATGATGATGGAGTGGTTATTGATGGATCATATCCTGGTAGTGAGAATGCTGGTCCATCAAGTAAAATCCAACCGGAAGGCCCACCTATTTTGGCTTCCTTGGGGCTAACACCGAGAAGTGACAAGAAATATGTAGATCCAAGAATGGACTGGCAGCGAGTTCATGCGATTTTGGACATGATTCAAGATGACGAAATCATTGACTCTTTACAATCTACCGAAGAGACTGACATTGTTCACAACTCGGACCATGATTCCGAAACAGATATAGAACTTCTCGATGATCTAAAAAACGAATACATAAATTGTGATTCTGGatacttatgtaaaaataagaGATCCCTCTCCAAAAATCCAAAATTATCTTCAATGGCTAcggtttcaaaaattaaaaagctaaTAAACTTGAGAAAGAGAAAAGTTATTCAGCCCAAGCATTATTCCTTGCCTAAAGATGTTTGGAAGCTGTTGATAACAGATGACTTATTGGAACTAATAGTCTCTTCTACAAATGAACAAATCACTGCTACAAAGAAAAAACCCATTTTGACAAATTCATGTGAAGTTAAATCTTTAATTGGTATATTATATTACCACGGAATAACGCGTCCAACTTATCAGAAGATTAGTGACCTTTGGCACAAAGAATTTGGAGTACCTTGTGTACAAAATGCTATGACGCTTGAAAGATTCAGGTATATTTTAGAGAATTTGCGTTTTGACACAGAAAACAGTGTCAGTCTGATCGAATTAGATGTAATGAAACGGATTCGTaaagtatttgaaatatttgcattaaattGTCGAACATGTTTTGAAGTTGGGAATACACTTGTAATTGATGAAATAATTCTACCAATTGATGGTCCATGTTCattcaaatacaatattaaaaaaaaagaactaaaaagTGGCTTGAAAGTTGTGCTGGTTGTAGATCCAGATAATTTCTTTGTTTCAAATATAGATGTAGTAACAGATCCTTACTTTGGTTCAAATGACATTGTCATGAAATTAGTTCAACACTTTGCTGGCACATGGAGGACTGTTATAATGGACAGTTGGTTTGCATCATTGACCCTTATGGAACAACTCAAGAAGGAATACCAGCTTTTTTCAATTGCTGCCATTAATGaaaatgaagatattttaccTCCAATTTTTATATCTCAGTATAGAAATACTCGACCATTTATCACaggatttttaaatgaagatgtATCGCTTACATCATACATgaatgaaaattcaaaaactatTAACATATTGACAAATGAGCCAAATTTTTATAAGAGAGGTCACGTCGACCATAGAACTGTTGTGTCTCAGTATAAAAGAAATCAATCTTCTGTGGTAGTTTTGGATGTTATTATGCATTACTACACGACGATGCAGCATACAAATGATTGGACACACTCTTTGTTTTTCATGCTATTGAACATAGCCTCAATTAATGCTCAAgGAAATGACTCAGAAAAAGACGAAGAAGATGAAGAGGAGGAAGAAGATATGAATGATGATTCTTATGCTGATGTACCGAACATGCCTGAGGTTTCAATCACAGTAATGCGTCCCACTGGTGAGACATTAGCTGCTCGACAAGGTATTCAGCAACTTGCATCTAAGGATTGTCTAGTATGTGGGCGAACTTACAGGTATTCACATAATGCTCGACGTCATGAGCTATCGGCGCATAACTTTGATAGATATACTAATAAGACTCTTCCTAAAAAACAACAATCCCACATGCAACCTAAACTGCGGCCTAATCCTTTTAATCCTAAGGCACGTCTAATGCCTAATCCTATAAGTCATAAAATGCAGTTTCTTCCAAAACCTCCGTCTAATAAGATTATACCTCAAAAAATCATTGCTTGCCCGAAACCAATACCTATTAGAAATTCTAAACCTCCTAATAGTTTGCCTTATCCTCTACGTATCAAAGCCCTGAAAGActtacaaataaagaaaaaagaaccacaaattcttaaaactttattaacttCAAAACCGGAGGTTTTAGTTTCTGAGCCAGAAATTCTTAATTCAGGACCTGAAAGTCCAGAAACATTGATATCAGAACCCGAAATTGCATCATTTCAAGTTGAAGCAATTTTATCAGAACCGGATGGTTATGGCCAGCAACAAGATGATGATGGTGATAATATTCATTACAATCAAAGTCAGAATTACGATACAGTTGATATGGATTCTGAACATGAGATAGAAATCGCACGTCAAAAAGATACCGATAATGAGAATGCTGAGCATGACCCTGAACACGAAAACGGTGATGATGCCATAGCTAAAGATGAACTTGATAATGAAAACGACAATCAAGACGACGAAAAAGATAACTTAGAAGAAATTAATGATAATGGATCTGAGCTCAAAGAAAGTTTTAAGGACGAAAATAAGGAGGCTGATGATGGCGATGCACAAGGTGCTGAAGATCAAAACCATGAAGAAAGCTATGATGGTTATGACGACGAAGATATGCCAATGGGCCTTGCTCCAGTTGTAGAAATTAATGAAGAAATTCAAGCAAACTCGATGAAAAATGAGAATGAGGATGAAGAAGATTTTGATGAATCTGGAAATGTTAATGACACTGCCGATGGAGAAGAAGTCGAGAAAGCCCTAGAtcctaataaattatacgttACGAAAACACAAAAAGAATTCATTACTAAACATCGTGATATAATCGAACAAATTAATACTAAACAATGTCTTTGTTGTAACAAAGAATACCCCAGAAGAAAAGCCGTTATTCAGCACTTACAGAAAAACGGACACAAAGTTCCTAAGCATACTTGTTACAATTGTGTAGTAACTTTCAGCCATATTGGCGCTTTATTGAGTCACATGCGGTCCAATACATGCACAGACCTTTGGAAAATAATCTATAATGAGAATGGAATTCCAGATGATCAAGTTCTAGAAGATGAGCCTAAAGATCCGGTGGTAAAGTACAAAGATATTTTCAATGCTAGATCCTATGCTTGTAAATTATGTCCTGCGAAATTCCAGTTGAAGCAGTTTATCATGAAACATGTCTTAGATGTGCATGAAGATGGTCAGTCGCTAGTGTCACTTGCGTGTGTTCATTGTGGATCAAGATTTAAAGACAAAGGTATGTGGAAGAAACACATTCGCAATGGAGAGTGCACGGTATACATTGCTTGCGATTTGTGCCCAGAAAAATTCATTACAATGCAAGATTTTAGTGACCATGCATTAGCAGTACACGCCGGGAGCTTTGATCCTGATAATCAAAACAAGTGTGTTGATGGAAGGCCTACAGATTGTCCTCTATGTGGAAAGAAGAATAGCAGCTATCCAAATTTagtgaaacatttaaaaataattcacaacGAGGACAACCCTCACTATTGTAAGCACTGTGAAGCTAAATTTGAGCAAGCTGCTGAccttaataaacatatttatactgAACATTCTGATAGATCTTTAATGTATACTAGTGACCCAGATATGTCATTAGTAAAGGAGGAAGCTGAAGAATATCATTATTCTTGTACTGAATGTAATGCTATATTTGAAACGGTTGATGCTTGGACTGATCATCAAGTAGCTGAACacaaccaaattgctcatcacTGCGATCAGTGTGAAAAGAAATTCTTAAGGCCTTCAGAATTAGCTGaacataaaaatactcatttacgAGTTAAATTTTATCCATGCAGCGTTTGTTCAAACTCTTACAGTACACCCCAAAAGTTGTCAGACCATGTCCAGCAAGCTCACCCAGGAGCCAGTAATTATGTTGCTACTGCATCTGCAGAAACTGAATTTTTCTGCGACATATGTATACGATCATTCAAAAGCCGCCAAGCTTATTCTAATCATATGCGCATACATGCTAAAATTCCTACAACGAATCGAAGACCAGGAGATCTTAAAGGAGGGTTTGCTCCTCAAATCATAGGAAAACCTATTAAACAATTTCCTTTGCAAGTGCAACCTGGTTTTAGTCCATTCAAACCAAACTGTAATGTACCTAATGCTCCTTACTCATGTGATATATGTGGAAAAGGTTTCATgcataaaaagaatatttggaagcATAAAAAAGTACTTCACGCAGATCTTGTCAATGAAAGAAACGATAGTGAAGAAAATACAATGCATGCCTCCACTGAAGAAGATGAATATAATGTCGATGAAAATGGAGTAATGTTGTCAACACCTCAGTTTAATAgcttcaattttacaaatatcacAAACAGCATGCCACAAGCACCACAACAGCCACAGCCAGTCCAGCCACCTCCACAAGAAGTTGTTCAACAACAATTTTCGTGTGATCTATGTTCCAAACGATTTCCTCTTAAAACAAGCTTATGGAAGCACAAGCGTGCAAAACATGGTATTATCAATGCAAGTTCCATTGGCACTCACGATACACCTCCTACAGTAAGTGAAGCAGGAAGCAGATCGAGTTGTACCATATGCAAGATAACATTTGCTGATAAGAAATCGTATTATCGCCACAGAAAGAATGTACATAAGTCTTCTGTGCAAATGTGTAAAATATGTGGCAAACCCTTGAATTCTACATTAGAATTGTATGAACATCTTAAAGCAGCACATGCGCGAGAACTGCTAGGATACAACGCAAATCAAAGTTCTACCAAAACCCAAGAGTTTATAAAAGAAGATCCGGACTATGAAGGAGATCAAGATTCTGCTGATCCTAGTATTGAATATCAAGCCCATTACCCTTGTGATATTTGTGGAAAGCAATTTGTGGGTTTACTAGCATTACAAAATCATCAGTGTATAAATCAAATTCAATCATCATCACAAACATTTGATTGTGAGATATGCCACAAAAGTTACACGTCAATTGCTGCGCTTAAGAGCCACCGTGGATGGCATTTACGTTCGCCTGATGGCAAAGCTGCTGCAAATAATTCTGGATTGTGGATGCCTCAGAATAAAGTTACTAATAAAGTCAGTAAATACGAGGTAGTTGACGCATCGCAACTAGCTAAAGTGACACATACAACTCCAGCTTCTATAGTCAAACGTAAATTACCACCCGAAGTTGAAGTGACTGTTGtaaatccaaacaaaaaaatgcgcTCCGATGATTCCGTTGAAATGGAACAACATAGTCAGATGTCTGGTGGAATGGAAGATAGATATTGTAATTTATGCGATAAGGAATTCACTAAGCGCGCAGCATATCAACGTCATATGGATGAAGTACATCAACCAAATTCCGTGTTTTGTCCAGTTTGCGACAAGAGCTTTACAAGAAAGtccacacttatagttcataTGAAAAAGCATTACGAAAATGAAGAAGGCAACCCTGGTACCTCTATGGATGAGCATGTGCCTCCTTGTGATATTTGTGGAGAACAATTTGACAATGCCCAAGATTTAGAAAACCATAGGGCAATGCACGACGGAGAAGAATCCGCTGAATCCGAAGACGATGGAGGGATTCCTGTTCAGCAGCCTGGTGAATTTACATGTGGTCAGTGTGGTGATGGTGTAGCCACACCTCGGGATTTAATAGCCCATCGCACCATGCATTCCACGCCTACAAAGTACTTCTGTAACATTTGTAAGGTTTACTTTGCCCGTGCTATTGATTTATCCACTCACACTCGGGCGAGACACTCTGAAAGCGACAAATTATTTTTCCCATGTGCGATGTGCGATCGGTTTTTCACAAACAAAAAGAGTTTACAAAGGCACATTGAAATGTCACACTGA
- Protein Sequence
- MNVNYDSVCRLCLSSRCELLPIFSTTSSDDSEPLVLASKIKDCVAVQINENDNLPTNVCRKCMDNVNNWHIFKGVCTRSQDKLQAWINGESNQLEEVKIKSEPLLEEIYDDGVVIDGSYPGSENAGPSSKIQPEGPPILASLGLTPRSDKKYVDPRMDWQRVHAILDMIQDDEIIDSLQSTEETDIVHNSDHDSETDIELLDDLKNEYINCDSGYLCKNKRSLSKNPKLSSMATVSKIKKLINLRKRKVIQPKHYSLPKDVWKLLITDDLLELIVSSTNEQITATKKKPILTNSCEVKSLIGILYYHGITRPTYQKISDLWHKEFGVPCVQNAMTLERFRYILENLRFDTENSVSLIELDVMKRIRKVFEIFALNCRTCFEVGNTLVIDEIILPIDGPCSFKYNIKKKELKSGLKVVLVVDPDNFFVSNIDVVTDPYFGSNDIVMKLVQHFAGTWRTVIMDSWFASLTLMEQLKKEYQLFSIAAINENEDILPPIFISQYRNTRPFITGFLNEDVSLTSYMNENSKTINILTNEPNFYKRGHVDHRTVVSQYKRNQSSVVVLDVIMHYYTTMQHTNDWTHSLFFMLLNIASINAQGNDSEKDEEDEEEEEDMNDDSYADVPNMPEVSITVMRPTGETLAARQGIQQLASKDCLVCGRTYRYSHNARRHELSAHNFDRYTNKTLPKKQQSHMQPKLRPNPFNPKARLMPNPISHKMQFLPKPPSNKIIPQKIIACPKPIPIRNSKPPNSLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEILNSGPESPETLISEPEIASFQVEAILSEPDGYGQQQDDDGDNIHYNQSQNYDTVDMDSEHEIEIARQKDTDNENAEHDPEHENGDDAIAKDELDNENDNQDDEKDNLEEINDNGSELKESFKDENKEADDGDAQGAEDQNHEESYDGYDDEDMPMGLAPVVEINEEIQANSMKNENEDEEDFDESGNVNDTADGEEVEKALDPNKLYVTKTQKEFITKHRDIIEQINTKQCLCCNKEYPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNTCTDLWKIIYNENGIPDDQVLEDEPKDPVVKYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSLVSLACVHCGSRFKDKGMWKKHIRNGECTVYIACDLCPEKFITMQDFSDHALAVHAGSFDPDNQNKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHNEDNPHYCKHCEAKFEQAADLNKHIYTEHSDRSLMYTSDPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSDHVQQAHPGASNYVATASAETEFFCDICIRSFKSRQAYSNHMRIHAKIPTTNRRPGDLKGGFAPQIIGKPIKQFPLQVQPGFSPFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVNERNDSEENTMHASTEEDEYNVDENGVMLSTPQFNSFNFTNITNSMPQAPQQPQPVQPPPQEVVQQQFSCDLCSKRFPLKTSLWKHKRAKHGIINASSIGTHDTPPTVSEAGSRSSCTICKITFADKKSYYRHRKNVHKSSVQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQSSTKTQEFIKEDPDYEGDQDSADPSIEYQAHYPCDICGKQFVGLLALQNHQCINQIQSSSQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTNKVSKYEVVDASQLAKVTHTTPASIVKRKLPPEVEVTVVNPNKKMRSDDSVEMEQHSQMSGGMEDRYCNLCDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYENEEGNPGTSMDEHVPPCDICGEQFDNAQDLENHRAMHDGEESAESEDDGGIPVQQPGEFTCGQCGDGVATPRDLIAHRTMHSTPTKYFCNICKVYFARAIDLSTHTRARHSESDKLFFPCAMCDRFFTNKKSLQRHIEMSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -