Cvir026715.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- -
- Assembly
- GCA_002245475.1
- Location
- NJDC01002553.1:83587-94638[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 6.6e-05 0.0059 17.6 0.4 1 23 88 111 88 111 0.93 2 26 0.18 16 6.8 1.1 2 23 137 159 136 159 0.91 3 26 0.2 18 6.6 0.8 2 23 182 203 181 203 0.96 4 26 0.00081 0.072 14.2 0.3 1 23 207 229 207 229 0.98 5 26 0.0069 0.61 11.3 3.6 1 21 234 254 234 257 0.95 6 26 0.012 1.1 10.5 0.7 2 23 264 286 264 286 0.92 7 26 0.00063 0.056 14.5 1.8 2 23 294 316 293 316 0.96 8 26 0.014 1.2 10.3 6.6 1 23 322 344 322 344 0.97 9 26 0.00017 0.015 16.3 1.3 1 23 350 372 350 372 0.99 10 26 8.1e-06 0.00072 20.5 3.4 1 23 378 401 378 401 0.97 11 26 0.0016 0.14 13.3 4.7 1 23 466 489 466 489 0.95 12 26 1.2 1e+02 4.3 0.2 2 23 516 538 515 538 0.81 13 26 0.24 21 6.4 0.7 2 23 561 582 560 582 0.96 14 26 0.0014 0.13 13.4 0.3 1 23 586 608 586 608 0.98 15 26 0.075 6.7 8.0 1.9 3 23 667 688 665 688 0.94 16 26 0.059 5.2 8.3 0.0 2 23 715 737 714 737 0.96 17 26 0.00032 0.028 15.5 0.1 1 23 821 844 821 844 0.94 18 26 0.17 15 6.9 0.0 2 23 871 893 870 893 0.95 19 26 0.024 2.2 9.5 0.7 2 23 916 937 915 937 0.96 20 26 0.00035 0.031 15.4 0.2 1 23 941 963 941 963 0.98 21 26 0.0055 0.49 11.6 0.5 1 23 968 991 968 991 0.95 22 26 3.1 2.8e+02 2.9 3.1 2 23 998 1020 998 1020 0.89 23 26 0.00012 0.011 16.8 1.5 2 23 1028 1050 1027 1050 0.96 24 26 0.024 2.2 9.5 7.2 1 23 1056 1078 1056 1078 0.97 25 26 9.2e-06 0.00082 20.3 1.0 1 23 1084 1106 1084 1106 0.99 26 26 4.6e-05 0.0041 18.1 4.2 1 23 1112 1135 1112 1135 0.98
Sequence Information
- Coding Sequence
- ATGGACACTGTCGTCGGGTTAActaatttgtgtgtgtgtgcgtgcgtgcttgtGTgTGAACGACGTCTCGATAACGTCAAAACCAAATCGAAAACTGTAACAAAGACTGTTGAGAAAGGTAAAGAGCTTGGTACATTATCTATTAAGATAGTAAATTCTAAAAAAGCAGAAATCGGATTAATGTCACAACACTTGATAAATATTCGAGAAATCTTAAAATGGTCTAATGCTACTCCTATACGTTCCTACGGTGGTATTGGTTACGAGTGCTACTTTtgtgataaacaatttactGACCCTGCAGATCTAAAGTCGCATACCTTGGATGTACATAAAGAAGGTTTTAATgttaaccaaaccaaaccagaTTTGGCtacattttgtgttaaaattgatataactgCACTACATTGTAATATTTGTGGTAAAAACATTGACACAATAGAAAGcttattaaatcattttaaatttaatcacaataaaagagtatttcctgatattaaaCACCATGTTCtaccttttaaatttaatagtgatACGTTGCAGTGCTTTATGTGtctgaataaatataataaatttaaattattgatcgCACACATGAATGTTCATTGCAGAAATTTTGTCTGTGATATTTGTGACTCTGGGTTTGTTAATAGGAAGAAACTTGACAATCATGTCCAAACCCATAAGACCGGGATCTTTAATTGTGATTTTTGTTCTAAAGTTTTCAATACTTTGTCGAAGATAAAGTCCCACATGAGATGCGTTCATAAGCCTTATCCTCGTAATCGCTGTGGCTATTGTAAAGAAACTTTTAAAGATTATCgtcaaaaagaaaaacatttggcAGAAGCTCACGGAGTACGTGCAAGTGGCTTACAGTGCAAAGCTTGCGATCGAAGGTTCAAAACACAAAGAGCGTTTAGGGTGCACACTCAAAGAGATCATTTGATGGAGAGGCAACATCAATGCAGTTTCTGTGAAATGACGTTCTTCTCGAAGACACAACTACATCAACACATGGTTAAACATACAGGAGCTCGTGAATTTAAATGTGAAATTTGTTATAAACTTTATGGCAGAAGACAAACCCTTAGGGAGCATATGCGGATACATGCTAATGATCGCCGTTTCAAGTGTGAATATTGCGGACAGTCGTTTGTTCAGAAATGTAGTTGGAGAGCCCATATGCGTAATAAACATGGAGAAGAGAgtcTACAAAGGGTTGTAAAACTTGAACTGGATGTTGTGTCAGACACTGTTGAAGAATTTGAAAACAGCATTAACGAAGCCTTAAGATGCAGGAACAAAGAATTAGGACAACATTTAGTAAACATAATATCTCTTTTATATTGGTCTAATGCTACACCGATTCGGTCTCATGACGGCGTGGGATATACTTGCTGCTTTTGTAGCAAACATTTCCCAGATCCCGCAGATCTAAAAAAACACACTAAagatacacacaaaaaaatatcggcagcatttttctttcaaaaaaagaatatggCTGAATTATCTGTTTATGTTGACATCACCGCACTTCAATGTaatatttgtgataaaaaaatagaaatgattGATGACGCACTGACGCATTTAAAGAATTTTCACAATAAAATGGCATTTACTGACATTAAGAATCAAATAattccatttaaatttaataatgatttattagAGTGTTTTATTTGTCTaaagaaaatcaataaattcaaattattgcTCACACATATGAATATTCATTGtagaaattttatttgtgaCTTATGCGATTCTGGATTTGTCAATCGTGCTAAACTTGATTATCATATGAAAACGCACGTGACTGATACTTCTTATGTTGTACCAGACAAAGTTGAGGAAAATGAAAAAGGCATATACAAGGCCTTGAATTGTAGAAACAAAAAGCTAGgacaacatttaataaatatacaaactcTGTTACATTGGTCAAATGCGACCCCTATCCGAACTCATGGAGGGGTAGGATTTGGTTGCTGCTTTTGTAGGCAACAATTTCCTGATGCCGCGGATCTGAAGAAACACACTAAAGATTCTCATGGAGATGTCTCTAAAGCCTGTTTCTTTTCCAAAAAAAGCCTAGCCCAACTAGCCGTTAATGTTGACATTACGGcattacaatgtaatatatgCGATGAGAAAATAGAAATGATTGACGATCTGCTGAAACATTTAAACGTTATTCATAACAAAATGACATTTTCAGAAATAAAGAATCAGATGGTACCATTTAAATTCAACAGTCCACAAAATAACAGAAAAGACAAAAATGTGGAAGCTTTACTGGATACAGTAACGGATTACGAAAATGACGACGATGGCTTCTATGAAGACTTGAACAACAGAAATAAAGAATTtggaaaacatttaataaatattaaatccatGTTACGATGGTCTAATGCTACTTCTATCCGGATTCATAATGGCATTGGGTTCGTGTGCAGCTTTTGTGGCAAACAATTTCCAGTTCCTGCCGACTTAAAAGAACACACAATAAACACACACAAGGATATTTCGAAAGCGAGTTTCTTGTTCAAAAAAGACATAGCTAATTTTAACGTCAAGGTTGATATAACTGGACTGCAATGCACAATTTGTGAAAAAGACATTGAAACAGTCGATGATTTAATGGGACATCTGAAAAATGACCATAACAAAATGGTTTTCAcggaaattaaaaatcaaattttgccTTTTAAATTTAACGGTGAAATATTGGAGTGTTTTATTTgcttaaacaaatttagtacATTTAAAAAGTTAGTAGAACACATGAATATACATGCCAGAAAttacatttgtaaaatatgCGATGTTGGATATATTAATCGTGGAAAACTAATCACACATTTAAAATCCCATGACACTGGCGCTTTTCCTTGCGAATTGTGTCCTAAAGTATTTAATACAATGACAAAGAAGAAATCGCACATTGCGAGCACTCATAACTTAAATAACCGAAATCGTTGTCAGTATTGtctaaaaactttcaaactCTTTCGTCAAAAAGAAATACACCTGCATCAGGCCCATAACGTAGTGAACCTTGCCCTGAAATGCAATTCCTGTGACAAAATGTTTATAACTAGACAAGATTTACGAATTCACACACAAAGATACCATTTATTGGAAAGACGATTTCATTGTAATTTATGcgaaatgacattttttaaatgtaaagaatTGAAACGTCATATGGTAAAGCATACTAAAGCGAGAGACTATCAATGTGATATATGCCTAAAATTTTATACGCAGAAGAGTGTTCTTAGAGAACATATGAGGATTCATGCCGATGATCGTCGCTTTAGATGTGATCAATGTGGACAGACTTTTGTACAGAAATGTAGCTGGAAAAGTCATATGCGTAGTAAACATGCAATCGAATTTAATTAG
- Protein Sequence
- MDTVVGLTNLCVCACVLVCERRLDNVKTKSKTVTKTVEKGKELGTLSIKIVNSKKAEIGLMSQHLINIREILKWSNATPIRSYGGIGYECYFCDKQFTDPADLKSHTLDVHKEGFNVNQTKPDLATFCVKIDITALHCNICGKNIDTIESLLNHFKFNHNKRVFPDIKHHVLPFKFNSDTLQCFMCLNKYNKFKLLIAHMNVHCRNFVCDICDSGFVNRKKLDNHVQTHKTGIFNCDFCSKVFNTLSKIKSHMRCVHKPYPRNRCGYCKETFKDYRQKEKHLAEAHGVRASGLQCKACDRRFKTQRAFRVHTQRDHLMERQHQCSFCEMTFFSKTQLHQHMVKHTGAREFKCEICYKLYGRRQTLREHMRIHANDRRFKCEYCGQSFVQKCSWRAHMRNKHGEESLQRVVKLELDVVSDTVEEFENSINEALRCRNKELGQHLVNIISLLYWSNATPIRSHDGVGYTCCFCSKHFPDPADLKKHTKDTHKKISAAFFFQKKNMAELSVYVDITALQCNICDKKIEMIDDALTHLKNFHNKMAFTDIKNQIIPFKFNNDLLECFICLKKINKFKLLLTHMNIHCRNFICDLCDSGFVNRAKLDYHMKTHVTDTSYVVPDKVEENEKGIYKALNCRNKKLGQHLINIQTLLHWSNATPIRTHGGVGFGCCFCRQQFPDAADLKKHTKDSHGDVSKACFFSKKSLAQLAVNVDITALQCNICDEKIEMIDDLLKHLNVIHNKMTFSEIKNQMVPFKFNSPQNNRKDKNVEALLDTVTDYENDDDGFYEDLNNRNKEFGKHLINIKSMLRWSNATSIRIHNGIGFVCSFCGKQFPVPADLKEHTINTHKDISKASFLFKKDIANFNVKVDITGLQCTICEKDIETVDDLMGHLKNDHNKMVFTEIKNQILPFKFNGEILECFICLNKFSTFKKLVEHMNIHARNYICKICDVGYINRGKLITHLKSHDTGAFPCELCPKVFNTMTKKKSHIASTHNLNNRNRCQYCLKTFKLFRQKEIHLHQAHNVVNLALKCNSCDKMFITRQDLRIHTQRYHLLERRFHCNLCEMTFFKCKELKRHMVKHTKARDYQCDICLKFYTQKSVLREHMRIHADDRRFRCDQCGQTFVQKCSWKSHMRSKHAIEFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -