Cvir012651.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- -
- Assembly
- GCA_002245475.1
- Location
- NJDC01004685.1:55135-55564[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-07 6.5e-05 23.2 0.0 5 44 23 62 19 63 0.81
Sequence Information
- Coding Sequence
- ATGCCACGaaagtataaaagaaaaaaaggagtGCGAGCTAGAATATGTTCGTGGACTATAGAAAACCTACAGTTAGCTTTCGATGAAATGGACAAAAAAACTATGGGGATAAACGAAATATCCCGAAAATTTGACATTCCATCGAGGACATTGCGAAGACGATATGCTGCTAAAAATACAACAAAGTTGACACTAGgaaaaCACCCTATTTTGGATTTTAACAACGAGAAAAGGCTAGTAAAGCACATTCTCAAGCTTGGTGATGCAGGATTTCCCCCAAACAGACAAGCCATACAGATGTTAGCTTATCAATTCGCTGAAAAGCTACAGCTAAAACATAACTTCGACCATAAAAACGAAATGGCTGGAGGTGCATAG
- Protein Sequence
- MPRKYKRKKGVRARICSWTIENLQLAFDEMDKKTMGINEISRKFDIPSRTLRRRYAAKNTTKLTLGKHPILDFNNEKRLVKHILKLGDAGFPPNRQAIQMLAYQFAEKLQLKHNFDHKNEMAGGA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00843463;
- 90% Identity
- -
- 80% Identity
- -