Cvir026942.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- -
- Assembly
- GCA_002245475.1
- Location
- NJDC01007061.1:1-860[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-07 7.6e-05 23.0 0.0 2 36 16 50 15 57 0.94 2 2 5.9 1.4e+03 -0.3 0.0 24 34 90 100 89 107 0.84
Sequence Information
- Coding Sequence
- ATGCCGCGAaactataaaagaaaaactaatcGGCAGTCTTGGAGCCAAGAATCCATGAGTAAGGCTATTGAAGCatggaagcaaaaaaaaatgggatgGGAATTGGCAGCAAAAACATTTGGTGTACCTCAGGCGACGCTTAGAAGACATGCACTAAACATGAACAAAACCTTAAATTCTAACTCTAAAGGACTAGGAAGATTCAAGACAACATTTACATCTGAAATTGAGAAGGAGCTGGTAAAACACATTAAGTTTTTGGAAACACGACTATTTGGTTTGACGCGAACATCTCTCCAAGAGCTTGCCTTTGAACTAGCTGAAAAAAATGGTTTCGATCACCCTTTTAACAAGGACAAGAAACGTGCTGGACAAGAATGGCTTGAAG
- Protein Sequence
- MPRNYKRKTNRQSWSQESMSKAIEAWKQKKMGWELAAKTFGVPQATLRRHALNMNKTLNSNSKGLGRFKTTFTSEIEKELVKHIKFLETRLFGLTRTSLQELAFELAEKNGFDHPFNKDKKRAGQEWLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01072435; iTF_00444024;
- 90% Identity
- -
- 80% Identity
- -